Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., protein transport protein HofC from Escherichia coli ECRC62

 Score =  152 bits (385), Expect = 1e-41
 Identities = 103/408 (25%), Positives = 198/408 (48%), Gaps = 24/408 (5%)

Query: 6   YQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPSVP 65
           + G   DG+   G++ A +  L    L  + + P S+ + A   +     W+   +  V 
Sbjct: 9   WHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLSLKRIAINSA----QWRGDKSAEV- 63

Query: 66  LEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASMQL 125
                    Q+ +L KAG+ L   +  LA+   +KQ +A L S+ ++L  G   S ++  
Sbjct: 64  -------IHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLP 116

Query: 126 HPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVLLA 185
              +F PL+ +MI+ GE TG+LD+   +LA   + + +   ++K+A+RYP  ++   ++ 
Sbjct: 117 WSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMV 176

Query: 186 MFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDF------FVNYWGLLLGIIVGLLFA 239
           +  +   V+P+F +++  F   LP  T+ ++T +DF       +  +G LL I   LL  
Sbjct: 177 VVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMR 236

Query: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
              W+      I    L LR+PI+G ++   +L++     +L  SAG+   Q +    E 
Sbjct: 237 RPTWL------IARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRET 290

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
           +   +  Q + +++  I +G  +     NA  F+PL +Q++  GE +G +D +L  ++  
Sbjct: 291 MRCPYWVQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNLAHH 350

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           +          L A +EP LL+    ++  L + ++LP++ + DA+ G
Sbjct: 351 HRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSG 398