Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., type II secretion system inner membrane protein GspF from Escherichia coli ECRC102

 Score =  181 bits (458), Expect = 5e-50
 Identities = 109/400 (27%), Positives = 200/400 (50%), Gaps = 4/400 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           MA F+YQ  +  G K SG++EA +   A ++L  + ++P  + +          +     
Sbjct: 1   MALFHYQASDIHGRKRSGILEADSARHARQLLREQALIPVRLDEKQVHHKHSLRSILRFR 60

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
                   L +  RQ+ +L  A +PL  ++  L +     + +  + +V  ++  G +L+
Sbjct: 61  PRGGSSAELALLTRQLATLVAASLPLEEALDALLRQSEKPRQRNLIAAVRTKVLEGHSLA 120

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
           A+M + P  F  L+ +M+  GE +GRLD  L +LA Y EQ    R R+  A+ YP  +  
Sbjct: 121 AAMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALLYPCVLTL 180

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNY--WGLLLGIIVGLLF 238
             +  + IL   V+P+    F      LPL TR+L+  ++    +  W LL   + G+  
Sbjct: 181 VAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLLLAAALGGI-- 238

Query: 239 AFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAE 298
           A R  ++  + R+ + HL LR+P+VG I      +R+ART S++ ++ VPL Q++ +S +
Sbjct: 239 AGRMILHQPSQRLAFHHLLLRLPVVGRISRGLNTARYARTLSILNASAVPLLQAMHISGD 298

Query: 299 AIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSD 358
            + N +   ++      +  GV++       ++F P++  M++ GE +G +D +L   +D
Sbjct: 299 VLSNDWARHQLATAAELVREGVSLHQALEQTSLFPPMMRHMIASGENSGELDSMLERAAD 358

Query: 359 FYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
             DRE    ++      EP+L+V +A +VL + L I  P+
Sbjct: 359 NQDREFSTQMQLALGLFEPLLVVGMAGVVLFIVLAILQPL 398