Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., protein transport protein HofC from Escherichia coli ECRC101

 Score =  154 bits (388), Expect = 6e-42
 Identities = 100/402 (24%), Positives = 196/402 (48%), Gaps = 12/402 (2%)

Query: 6   YQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPSVP 65
           + G   DG+   G++ A +  L    L  + + P S+ + A   +     W+   +  V 
Sbjct: 9   WHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSA----QWRGDKSAEV- 63

Query: 66  LEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASMQL 125
                    Q+ +L KAG+ L   +  LA+   +KQ +A L S+ ++L  G   S ++  
Sbjct: 64  -------IHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLP 116

Query: 126 HPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVLLA 185
              +F PL+ +MI+ GE TG+LD+   +LA     + +   ++K+A+RYP  ++   ++ 
Sbjct: 117 WSEVFPPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMV 176

Query: 186 MFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAWVN 245
           +  +   V+P+F +++  F   LP  T+ ++T +DF   +  LL+   + L  A +  + 
Sbjct: 177 VVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLMR 236

Query: 246 TTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFL 305
                I    L LR+PI+G ++   +L++     +L  SAG+   Q +    E +   + 
Sbjct: 237 RPTWLIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYW 296

Query: 306 EQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVD 365
            Q + +++  I +G  +     NA  F+PL +Q++  GE +G +D +L  ++  +     
Sbjct: 297 VQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNTM 356

Query: 366 YDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
                L A +EP LL+    ++  L + ++LP++ + DA+ G
Sbjct: 357 ALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSG 398