Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., type II secretion system inner membrane protein GspF from Dickeya dianthicola ME23

 Score =  197 bits (502), Expect = 4e-55
 Identities = 117/399 (29%), Positives = 203/399 (50%), Gaps = 1/399 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAE-KSAFDFNWKAL 59
           MA F YQ  NA G K+ G+ EA +   A ++L  KG+VP  I +   E  S   F+    
Sbjct: 1   MALFQYQALNAQGKKSQGMQEADSARHARQLLREKGLVPVKIEEQRGEVTSRSGFSLSLR 60

Query: 60  LTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNL 119
            +  +    L +  RQ+ +L  A +PL  ++  +A+     +L A + +V  ++  G +L
Sbjct: 61  RSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSL 120

Query: 120 SASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVI 179
           + +M   P  F  L+ +M+  GE +G LD  L +LA Y EQ  + R RI+ AM YP  + 
Sbjct: 121 AEAMGNFPGSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180

Query: 180 TFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFA 239
              +  + IL   V+P+    F      LPL TR+L+  SD   +Y   ++ ++V  +  
Sbjct: 181 LVAISVVSILLSAVVPKVVEQFIHMKQALPLSTRLLMGVSDAVRSYGPWVVVLLVLAVMG 240

Query: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
           FR  +     R+ +    L +P++G I      +R+ART S++ S+ VPL Q++ +S + 
Sbjct: 241 FRVLLRQEKHRLVFHRRLLFLPLIGRIARGLNTARYARTLSILNSSAVPLLQAMRISGDV 300

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
           + N +   R+ +    +  GV+++      ++F P++  M++ GE +G +D +L   +D 
Sbjct: 301 LTNDYARFRLGQATDAVREGVSLNKALEQTSLFPPMMRHMIASGERSGELDGMLTRAADN 360

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
            DRE    +       EP+L+V +A +VL + L I  P+
Sbjct: 361 QDREFSAQMTLALGLFEPLLVVSMAGIVLFIVLAILQPI 399