Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., general secretory pathway component, cryptic from Escherichia coli BL21

 Score =  176 bits (445), Expect = 1e-48
 Identities = 106/395 (26%), Positives = 196/395 (49%), Gaps = 7/395 (1%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + Y+    DG K  G+++A  E  A   L  +G+    I     +KS+          P 
Sbjct: 3   YRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRP---QKSS----GVKTRRPR 55

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
           +    L +F RQ+ +L+ A +PL  S+  + Q   NK+L   L+ V + +  G  LS ++
Sbjct: 56  ISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDAL 115

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           Q  P +F  L+ ++++ GE +G L   L +LA Y E   + R ++  ++ YP  + T  +
Sbjct: 116 QHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAI 175

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAW 243
             + IL   V+P+ T  F      LPL TRIL+  SD        LL  +  +   F  W
Sbjct: 176 GVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLW 235

Query: 244 VNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNK 303
           +   N R R+  + LR+ ++G ++     +R+ RT S++ S+GVPL   + LS E+++N 
Sbjct: 236 LKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNL 295

Query: 304 FLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDRE 363
            + QR+      +  G ++  +     IF P+++ M++ GE++G++  L++  +D  +  
Sbjct: 296 EIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETL 355

Query: 364 VDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
               +    +  EP L++ +A +VL + + +  P+
Sbjct: 356 QQNRIALTLSIFEPALIITMALIVLFIVVSVLQPL 390