Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., putative type II secretion protein GspF from Escherichia coli BL21

 Score =  199 bits (506), Expect = 1e-55
 Identities = 114/398 (28%), Positives = 199/398 (50%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           MA FYYQ    +G K  G++EA +   A ++L  K ++P  I       +      +   
Sbjct: 1   MALFYYQALERNGRKTKGMIEADSARHARQLLRGKDLIPVHIEARMNASAGGMLQRRRHA 60

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              V    L +F RQ+ +L +A +PL   ++ +++      +K+   ++ + +  G  LS
Sbjct: 61  HRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLS 120

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            S++ HP +F  LF SM+  GE +G LD  L +LA Y EQ    + R+  AM YP  ++ 
Sbjct: 121 DSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV 180

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
                + IL   V+P+    F   G  LP  TR LI  SD         L  ++GLL   
Sbjct: 181 VATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLG 240

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           +  +     R+RWD   LR+P+ G +      +RF+RT S++ ++ VPL + +  +A   
Sbjct: 241 QRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS 300

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N+++EQ++L    ++  G ++ A      +F P+++ M++ GE++G ++ +L + +   
Sbjct: 301 ANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQ 360

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
           +RE D  +       EP L+V +A +VL + + I  PM
Sbjct: 361 EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPM 398