Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 47.4 bits (111), Expect = 8e-10
 Identities = 55/259 (21%), Positives = 119/259 (45%), Gaps = 20/259 (7%)

Query: 70  VIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASMQLHPAI 129
           ++F R + ++  + V L  ++R +A     + ++   + + + +  G +L+ +M   P  
Sbjct: 60  ILFIR-LAAMLDSRVGLAEALRRIAAAFRGR-IRRTAERMADAVELGDDLADAMLRQPRS 117

Query: 130 FSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVET-----RKRIKTAMRYPTFVITFVLL 184
           F P+ V++++ G   G    A L+ A  +E+++       R  +  A+ Y       ++ 
Sbjct: 118 FPPVLVALVRAG-GFGEGTPAALRTAAEFERQLAGARQGFRSGLALAVLYVVTAGVVMVG 176

Query: 185 AMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAWV 244
             F+L   ++   T +F R G ++ +    L++      N    L+ I++  L A    +
Sbjct: 177 TSFVLTPLLLE--TEVFRRAGEEVNVDWVYLLS------NLTTGLVAIVLAAL-AVLGGL 227

Query: 245 NTTNGRI---RWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAID 301
            T   R    R D L +R+P+  DI    Q     R  SL+++ GVP++++L L+A+   
Sbjct: 228 ATAGRRAAPERVDRLVMRIPLYRDIALGIQHHVIFRELSLLVAGGVPIDRALRLTADGAP 287

Query: 302 NKFLEQRILEMKSQIESGV 320
              L   +++    + +G+
Sbjct: 288 AGALAADLIDATRAVAAGL 306