Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  199 bits (507), Expect = 9e-56
 Identities = 106/402 (26%), Positives = 214/402 (53%), Gaps = 7/402 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGA----AEKSAFDFNW 56
           MA F ++  NA G   +G++E        + L  KG++P  + Q A    +E     F+ 
Sbjct: 1   MAAFAFKAVNARGKNTNGVLEGDNARQVRQQLREKGLIPLEVEQVAERAQSEGKGLSFS- 59

Query: 57  KALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNG 116
             L  P +    L +  RQ+ +L ++ +P+  ++  +A+ C   + K  + +V +++  G
Sbjct: 60  --LFKPRISASDLALLTRQLATLVESALPVEEALLAVAEQCEKNRQKNMMMAVRSKVVEG 117

Query: 117 RNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPT 176
             L+ ++   P++F  L+ +M+  GE +G LD  L +LA Y E+  +TR +I  AM YP+
Sbjct: 118 HGLADALGQFPSVFDELYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQAMIYPS 177

Query: 177 FVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGL 236
            ++ F +  + +L   V+P+    F   G DLP  T+ LI+ S +  NY   +L  I  L
Sbjct: 178 LMLFFAMGIVLLLLTVVVPKIVGQFDHMGQDLPAITQFLISVSTWLQNYGLFMLIGIAVL 237

Query: 237 LFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALS 296
           +   +  +   + ++R+    L +P++G +      +RFART S++ ++ VPL +++ +S
Sbjct: 238 VVIIQRVLQQKHMKLRYHRALLTLPLIGRVSRGLNTARFARTLSILSASAVPLLEAMRIS 297

Query: 297 AEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEV 356
            + ++N+ ++ ++ +    ++ G ++ A   N  +F P+++ M++ GE++G + ++L   
Sbjct: 298 GDVLENQHIKNQVADAAINVKEGSSLRAALDNTKMFPPMMMHMIASGEKSGELQQMLARA 357

Query: 357 SDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
           +D  DRE +  +       EP+L+V +A +VL + + I  P+
Sbjct: 358 ADNQDREFEALIGVSLKVFEPLLIVSMAGIVLFIVMAILQPI 399