Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  197 bits (500), Expect = 6e-55
 Identities = 120/400 (30%), Positives = 217/400 (54%), Gaps = 11/400 (2%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           F +QG++  G    G + AA+   A  +L  +GI    + + +  KS F    K      
Sbjct: 7   FEWQGKDRQGLSRKGEISAASLSEAKNLLRRQGISANRVKKPS--KSLFRREKKI----- 59

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
            P ++ VI  RQ+ ++  AGV L++S+  ++Q   N  ++  L  + +E+  G  LS+++
Sbjct: 60  TPADISVI-SRQIATMLAAGVTLIQSLEMISQGHANSSMRKLLGEITDEVKAGNPLSSAL 118

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           + HP  F  L+  ++  GE +G L+    ++A Y E+    + +IK AM YP  V+    
Sbjct: 119 RKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPIAVLVVAF 178

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGI-IVGLLFAF-R 241
           +   IL + V+PQF  +FS FG +LP  T+ ++  S F  +Y G+ + I I G  F F R
Sbjct: 179 IVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDY-GIFIAIGIGGAGFMFMR 237

Query: 242 AWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAID 301
            +  +   R   D   L++P++G+I+ +A ++RF RT +   +AGVPL  +L  +A A  
Sbjct: 238 TYKRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASG 297

Query: 302 NKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYD 361
           N      IL M+ ++  G+ +        +F  +V QM+++GEE+G +DE+L +++  Y+
Sbjct: 298 NAVYRDAILYMRKEVAGGMPMHVAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYE 357

Query: 362 REVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGM 401
            EVD  +  LT+ +EP+++  +  ++  L + ++LP++ M
Sbjct: 358 AEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQM 397