Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  425 bits (1093), Expect = e-123
 Identities = 206/410 (50%), Positives = 305/410 (74%), Gaps = 3/410 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQG---AAEKSAFDFNWK 57
           M  F Y G++  G    G++EAA+ + AA+ LL++ IVP +I +    +AE     F+  
Sbjct: 1   MPQFKYAGKSTQGGPQKGIIEAASAQAAAQALLSQNIVPLTIVESKKRSAENEGDGFDIT 60

Query: 58  ALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGR 117
            L    V L+ ++IF RQM+SL KAG+P++R+++GL++N  +K+ +  L  + ++L  GR
Sbjct: 61  RLFQQKVGLDEMIIFSRQMYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGR 120

Query: 118 NLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTF 177
           +LS+SM  +  +F+ L +S++ VGENTG+LD   LQLA Y+E+E ETR+RIK+A+RYPTF
Sbjct: 121 SLSSSMAKYEKVFTRLTISVVVVGENTGKLDDVFLQLALYFEREQETRRRIKSALRYPTF 180

Query: 178 VITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLL 237
           V+  + +AMFILN+ V+P FT MF RF  +LP+ TR+LI TS+FFVNYW LL+ +IVG +
Sbjct: 181 VLIALAIAMFILNLFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLLIFVIVGGI 240

Query: 238 FAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSA 297
           FA + +VN+TNGR++WD  +L++PIVG I+ R+ LSR++R+FS++L AGVPL   L+L+A
Sbjct: 241 FAVKQYVNSTNGRLKWDKFKLKLPIVGSIIERSLLSRYSRSFSMILRAGVPLTAGLSLTA 300

Query: 298 EAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVS 357
           +A+DN  + +RI EM+  IE G ++   + N+ +F+ LV+QM++VGEETGR++ LL E +
Sbjct: 301 DAVDNAHMRKRIKEMRQGIEKGESLLRVSKNSELFSTLVLQMIAVGEETGRLEPLLEESA 360

Query: 358 DFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           D+Y+REVD+DLK+LTA+IEPIL+ FVA MVL+LALGIF PMW MM A+KG
Sbjct: 361 DYYEREVDFDLKSLTAKIEPILIGFVAVMVLILALGIFTPMWNMMSAVKG 410