Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., Type II secretion system protein F from Acinetobacter radioresistens SK82

 Score =  177 bits (450), Expect = 4e-49
 Identities = 112/402 (27%), Positives = 198/402 (49%), Gaps = 6/402 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + +   +A G +  G++E  +     + L +K  +P S+     ++     +W+   
Sbjct: 1   MPAYQFTAMDASGKQQKGILEGDSARQIRQQLRDKTWIPVSVEPVENKEKGQTRSWRK-- 58

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              +    L +  RQ+  L  A +PL  ++R + +      ++  L SV +++  G +L+
Sbjct: 59  -KGLNAYDLALMTRQLSVLVAAAIPLEEAIRAVGKQSEKVHVQNLLMSVRSKVLEGHSLA 117

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            ++Q     F  L+++ I  GE +G LD  L QLA Y E     +K+I+ AM YP  ++ 
Sbjct: 118 QAIQ-QSGRFPDLYIATIAAGERSGHLDLILDQLADYTENRFAMQKKIQGAMVYPIILML 176

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGI-IVGLLFA 239
                +  L   V+P     F +    LP  T IL+ TSDF    W  LL I +VG++  
Sbjct: 177 MSFAIVMGLMTYVVPDIVKTFDQSKQALPAITVILMKTSDFIRQAWPFLLVISVVGIMLL 236

Query: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
            R ++ T+ G   +D   L++P+ G +      +RFA T S++  +GVPL  +L + A  
Sbjct: 237 IR-FLKTSAGHYTFDRFVLKLPLFGKLARGINAARFASTLSILTRSGVPLVDALKIGAAV 295

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
            +N  +   +     ++  G  ++     A  F P+++QM+  GE +G +D +L   S  
Sbjct: 296 SNNWVIRDSVNLAAEKVTEGGNLATQLERAGYFPPMMVQMIRSGEASGELDRMLERASTM 355

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGM 401
            DREV   + TL A +EP++LV +A +VLV+ + + LP+  M
Sbjct: 356 QDREVATFISTLLALLEPLMLVVMAGIVLVIVIAVMLPIVNM 397