Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

 Score =  348 bits (892), Expect = e-100
 Identities = 209/530 (39%), Positives = 309/530 (58%), Gaps = 20/530 (3%)

Query: 43  LISLGFLSETQLLNFLAQQLSLPVIDLSRAHVDIDAVPLLPEVHARRLRALVIGRSGDTL 102
           L  LG +SE +L    A  L  P++    A   +D +P+L E   R  + + +G +   L
Sbjct: 49  LTRLGLVSEVELARAWAALLGAPLLLADAAPPLLDPLPVLTERFMRHYQVVPMGWTQGGL 108

Query: 103 RIAMSDPADLFAQEALLN--QLPDYGFEFVIAPEKQLVDGFDRYYRRTKEIV-SFAEQLH 159
           R+  ++PA L+  +AL    Q+P +     I P  ++    +RYY + +  + +  E L 
Sbjct: 109 RVLAANPAQLYPFQALAYACQVPVW---LAIGPRNEVDTLIERYYGQGRSAMGTLIENLD 165

Query: 160 AEHKTNDSFDFEITDSDSDEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDGV 219
            +    +  D E     + E  V++L+N + + A++  ASDIHIEP  N L++R RIDGV
Sbjct: 166 EQGGAEE--DIEHLKDMASEAPVIRLVNLILQRAVEQRASDIHIEPFENQLKVRYRIDGV 223

Query: 220 LHETLLHEVNIASALVLRLKLMANLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGE 279
           LH+      + ++A++ R+K+MA LDI+E+RLPQDGR  +R++G+ +D+R+ST+P   GE
Sbjct: 224 LHDAEAPPASSSAAVISRVKIMARLDIAERRLPQDGRIMLRIQGKELDLRVSTVPTSFGE 283

Query: 280 SVVMRLLNQSAGVRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNE 339
           SVV+RLL++          G     L      L+RPHG++LVTGPTGSGKTTTLY AL+ 
Sbjct: 284 SVVLRLLDRQTVQFDFPSLGFDGQRLASFLDLLERPHGILLVTGPTGSGKTTTLYTALSR 343

Query: 340 LNTSGKKIITAEDPVEYRISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVGEMRDQET 399
           LNT+ +KIIT EDPVEY++  INQ+QV P I LDF+  LR+ +RQDPD+I++GE+RD ET
Sbjct: 344 LNTTERKIITVEDPVEYQLEGINQIQVKPAIGLDFAGALRSIVRQDPDVIMIGEIRDLET 403

Query: 400 VEIGLRAALTGHLVLSTLHTNDAVDSALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDC 459
             I ++++LTGHLVLSTLHTN A  S  RL+DMG   YL+AS V  ++AQRLVR++ P  
Sbjct: 404 CRIAIQSSLTGHLVLSTLHTNSAAASITRLMDMGVESYLIASTVSGILAQRLVRRLDPVT 463

Query: 460 S-GHDEVDEARRQWLVTRFPNQAAAKFTRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDC 518
               +   E   +  + R   Q      RG          Y GR  + E+L ++  +   
Sbjct: 464 RVAFEAPPELIAEHGLDRLTEQRPILLYRG---------DYHGRSALTELLVMNDELRSL 514

Query: 519 L-RANDAVAFSKAARSNTDYKPLLASAMELALQGIVSLDEVMSLGEGDSS 567
           L R  DA    +AAR     + L    +  AL GI SL+EV+ +  G+ +
Sbjct: 515 LMRHADAATLEQAAR-RAGLRTLYEEGLRQALAGITSLEEVLRVTRGEGA 563