Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., putative type II secretion system protein HxcR from Pseudomonas sp. DMC3

 Score =  321 bits (823), Expect = 4e-92
 Identities = 177/391 (45%), Positives = 240/391 (61%), Gaps = 18/391 (4%)

Query: 171 EITD--SDSDEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEV 228
           EITD     D   V+++IN+L   A +  ASDIHIEP      +R R+DG L + +    
Sbjct: 88  EITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPFETHSVVRYRVDGTLRDVVSPRK 147

Query: 229 NIASALVLRLKLMANLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGESVVMRLLNQ 288
            +  ALV R+K+MA LDI+EKRLPQDGR  +RV G+ +DIR+ST+P  HGE VVMRLL++
Sbjct: 148 ALHGALVSRIKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDK 207

Query: 289 SAGVRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKII 348
            AG   LE  G+   +L +L H +++PHG++LVTGPTGSGKTT+LY AL  L+ S   I+
Sbjct: 208 QAGRLHLETLGMDAQVLAKLDHLIRQPHGIVLVTGPTGSGKTTSLYAALARLDASTSNIL 267

Query: 349 TAEDPVEYRISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAAL 408
           T EDPVEY +  I+Q+QVN KI++ F+  LR  LRQDPDII++GE+RD ET +I ++A+L
Sbjct: 268 TVEDPVEYDLPGISQIQVNAKIDMTFALALRAILRQDPDIIMIGEIRDLETAQIAVQASL 327

Query: 409 TGHLVLSTLHTNDAVDSALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEA 468
           TGHLVL+TLHTNDAV +  RLIDMG   +L+AS++  V+AQRLVR++C  C   D     
Sbjct: 328 TGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSMLGVLAQRLVRRLCNQCKQED----- 382

Query: 469 RRQWLVTRFPNQAAAKFTRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLRANDAVAFS 528
                       A     R  GC  CN TGY GR G+ E+  +D  +   +         
Sbjct: 383 -----------PATPGTWRPVGCAACNHTGYSGRTGIHELFCIDDNIRTLIHQGAGEQAL 431

Query: 529 KAARSNTDYKPLLASAMELALQGIVSLDEVM 559
           +AA S      L          G  + +E++
Sbjct: 432 RAAASKAGMFSLREDGERWIRSGATAPEEIL 462