Pairwise Alignments

Query, 281 a.a., MSHA biogenesis protein MshM from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., putative secretion ATPase, PEP-CTERM locus subfamily from Alteromonas macleodii MIT1002

 Score =  146 bits (369), Expect = 6e-40
 Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 3/249 (1%)

Query: 1   MYLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEGVSKLTGEVGTGKTMVC 60
           MY S++GL   PF LTPD E F     H  A+  L   +   EG   +TG +GTGKT V 
Sbjct: 1   MYESYYGLNSKPFQLTPDPEFFFASKWHKRAMSYLQYGLSQAEGFIVITGGIGTGKTTVA 60

Query: 61  RMLLTHLGDEVALIYLPNPMLSGEELRQAVAAELQLDVA--SPVRVVEQIQTRLIELHQQ 118
             LL  + D++A   +  P LS +EL + VA++  +     S   +++ ++  L +L++ 
Sbjct: 61  NSLLEEIEDDIAAAQIVTPKLSPDELVKMVASKFDIPTEGRSKADILKALEIFLYDLNKA 120

Query: 119 GKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIGQPELDVRLAQHHLRQFRQ 178
           G+R + LVDEAQ L  E +E LR+  N +     L+Q  L+GQ EL   L   ++ QFRQ
Sbjct: 121 GRRALLLVDEAQNLPLETIEELRMLSNFQLNGKPLIQSFLLGQEELQPILRAPNMEQFRQ 180

Query: 179 RITFNANLRPLTQAETEVYIESRLQKA-QAPYPLFNATLKKAVWRASQGIPRLINQICHK 237
           RI  + +L PL+  E + YIE RL  A      LF+    + +   S+GIPR IN +  +
Sbjct: 181 RIVASCHLAPLSLEECKEYIEYRLHHAGWNGSQLFSEEAFERIHMFSRGIPRKINTLMDR 240

Query: 238 ALLLAWHEQ 246
            +L  + E+
Sbjct: 241 VMLYGFLEE 249