Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., type IV pilus secretin PilQ from Rhodanobacter sp. FW510-T8

 Score =  107 bits (266), Expect = 2e-27
 Identities = 123/552 (22%), Positives = 224/552 (40%), Gaps = 79/552 (14%)

Query: 8   SVVTSLVGCSMGHRDPVEAKQALNQAINETNSRQIDQLPPSVEADLMPDMDTLTASEPK- 66
           S+VT   G   G R  +  K  +  +  +T ++ + ++ P    D   D       EP  
Sbjct: 232 SIVTR-AGAGGGARMEIAVKGNVETSAYQTANQYVVEVAPKRAEDKPADRLARLTQEPNY 290

Query: 67  TLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYG 126
             +R     +D+  ++    +   +  +     +V G +TL L +V  D+AL V+     
Sbjct: 291 NGKRVTFNFQDIPVRSALQLIADISGLNLVASDSVGGSVTLRLVNVPWDQALDVILRAKS 350

Query: 127 FEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSS 186
            +  + G V+ V P          D    K   +    + T  +  +    ++ +   +S
Sbjct: 351 LDKRRNGNVVWVAPQA-ELAKYEQDVADAKLKAQDTAELVTDYVPISYGKAADIAKLLTS 409

Query: 187 SISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNP 246
                    G  +++       RG    +T                              
Sbjct: 410 GSMQGGGGAGGGASTQRGFLSPRGSVSFDT------------------------------ 439

Query: 247 QAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSN 306
           +   L L   P++I+Q+ E + +  + + +QV++E++I  V  SD + + +         
Sbjct: 440 RTNTLLLNDTPEKIKQLRELIAVLDKPV-QQVLIESRI--VVASDDFTREL--------- 487

Query: 307 GANYKI-GSGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVI----SSGSF-------- 353
           G  + + G  + TQ  N    T  L      GN+  G  NV +    ++G+F        
Sbjct: 488 GTKFGVTGRVNNTQFQNAAAATPALTAGLGGGNVTSGGLNVNLPVSPAAGTFGLAILGAN 547

Query: 354 ---DAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASP 410
              D  +S   T+G   V+SSPRV  +N Q+AVI+ G +  YVT  +S  G+G     S 
Sbjct: 548 YAIDLELSAAQTEGRGEVISSPRVITANQQEAVIRQGQEIGYVTFQNSA-GSG---AGSG 603

Query: 411 DITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELP----LAR 466
             T+    + + L VTP I     V L     +I V++        +  ++ P    +  
Sbjct: 604 TATVQFKDAVLELKVTPTITADNRVYL-----MINVKKDAL-----AGYVDAPGSGKIPT 653

Query: 467 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 526
              RE ++ +   +G  VV+GG+ + N  + ++KVP LGD+P +G LFR T++   K EL
Sbjct: 654 IDTREINTSVLVDNGQTVVLGGIYEINKANTMTKVPGLGDIPGVGVLFRKTSRTNTKAEL 713

Query: 527 VILLKPTVVGVN 538
           +I + P ++  +
Sbjct: 714 LIFVTPRILSAS 725