Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., secretin from Pseudomonas simiae WCS417

 Score = 75.1 bits (183), Expect = 5e-18
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 30/255 (11%)

Query: 306 NGANYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGD 365
           +GAN+  GS ++   S G  +  +    D          NV    G   A+I+ +   G 
Sbjct: 158 SGANFFFGSPNLLSPSEG--VFKLPVSTDGF--------NVGFGGGRVKAMINALERSGF 207

Query: 366 LNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDV 425
              L+ P + A + Q A    G +          V     +  S  I++     GI L +
Sbjct: 208 AYTLARPSLVAMSGQSASFLAGGE----------VPIPVPSAGSDTISIEYKEFGIRLTL 257

Query: 426 TPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVV 485
           TP + D+  + L V P V E++        + + I++P    ++R +D+ +   DG+  V
Sbjct: 258 TPTVIDRSRISLKVAPEVSELDYSNA---VQIQGIQVPAL--TVRRTDTSVSLADGESFV 312

Query: 486 IGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVVGVNTWQKEL- 544
           I GL+ SN    ++K P LGD+P LG  FR++    ++ EL++++ P +V       +L 
Sbjct: 313 ISGLISSNNRSTINKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQLP 372

Query: 545 ----ERSRSLLQEWF 555
               E+ RS    W+
Sbjct: 373 SLPGEKLRSYDPNWY 387