Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

 Score = 91.3 bits (225), Expect = 7e-23
 Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 30/266 (11%)

Query: 276 RQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNG------NPITSV 329
           RQV++EA+I+E  +      G  W      N  N+  G+G I +          NP  S 
Sbjct: 191 RQVMIEARIVEANVDYDKSLGARWGGRL--NRGNW--GAGGIAKPPPEGAAPPENPPPSP 246

Query: 330 LPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTD 389
              L ++    G     +  +   D  ++ M   G+  ++S P+V  S+ + A I  GT+
Sbjct: 247 FVDLGSLTGTSGLGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTE 306

Query: 390 EYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQ 449
             Y    SS   +    +AS           +SL+VTPQI     V++ V     E +  
Sbjct: 307 IPYQESSSSGATSVSFKEAS-----------LSLEVTPQITPDDRVIMEVKVTKDEPD-- 353

Query: 450 TKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPA 509
                Y ++  ++P  + +  E ++ +  KDG+ +VIGG+  +     V KVPFLGDVP 
Sbjct: 354 -----YLNKLNDVPPIKKN--EVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPY 406

Query: 510 LGHLFRNTTKLTQKTELVILLKPTVV 535
           LG LFR      +K+EL++ L P ++
Sbjct: 407 LGRLFRRDVLAEKKSELLVFLTPRIM 432



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 38  NSRQIDQLPPSVEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAI 97
           N   + QLPP       P   TL A    T  +  +  + +E +     +      +   
Sbjct: 7   NRVDLIQLPP-------PGGTTLNAY---TGDKLSLNFQSIELRTALQQIADVAGLNLVA 56

Query: 98  HPAVTGRITLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPA 141
              V G ITL L DV+ D+AL +V    G +   +  V+ V PA
Sbjct: 57  SDDVQGSITLRLKDVSWDQALDLVLQAKGLDKRVKAGVLLVAPA 100