Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

 Score =  107 bits (267), Expect = 2e-27
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 34/316 (10%)

Query: 227 EKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR---QVILEAK 283
           EK VA       G  +     +  L +R  P + +++   +    +R+     QV +E +
Sbjct: 391 EKEVAPTSALEAGTRITAQKSSNQLLVRTRPAQWKEIEAAI----KRLDNPPLQVQIETR 446

Query: 284 ILEVTLSDGYQQGINWSKA-FSSNGANYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGG 342
           ILEV L+     G+ W     + N ++  + + S +Q + G             G  LG 
Sbjct: 447 ILEVKLTGELDLGVQWYLGRLAGNSSSTTVANASGSQGALGGG-----------GAGLGA 495

Query: 343 QSNVVIS--SGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVV 400
             ++  S  S +    +  + T G   VLS+P +   NNQ A I+VG D   +   +   
Sbjct: 496 TDSLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVG-DNIPINQTTVNT 554

Query: 401 GTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEI 460
           G  D   +S +   T    G+ LDV P+I+  G V + +   V + E Q       S   
Sbjct: 555 GDADTTLSSVEYVQT----GVILDVVPRINPGGLVYMDIQQQVSDAENQ-------STNS 603

Query: 461 ELPL-ARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTK 519
           + P+  R S R   + +  + G  V++GGL+K +  + VS VP+LG +P L  LF +T+K
Sbjct: 604 DTPVNPRISTRSVSTQVAVQSGQTVLLGGLIKQDNQESVSAVPYLGKIPGLRWLFGSTSK 663

Query: 520 LTQKTELVILLKPTVV 535
              +TEL++L+ P V+
Sbjct: 664 SKDRTELIVLITPKVI 679