Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

 Score =  115 bits (288), Expect = 6e-30
 Identities = 102/407 (25%), Positives = 175/407 (42%), Gaps = 60/407 (14%)

Query: 148 IPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSS-ISSNSSSDGSSSNSNSNRS 206
           I V YL+     R   ++      N  T+ S    ++ SS +   S+      N +  ++
Sbjct: 298 IYVVYLKNADAVRLAATLRAAMAANQQTSASGQPGAAGSSPVPQQSAPQAMQVNLSGGQN 357

Query: 207 DARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEF 266
                      N +                +GGQ +  +P    L + A   + RQ+   
Sbjct: 358 GGSAAASAPLNNANQ-------------PSTGGQ-IQADPTTNSLIITAPEPQYRQMRAV 403

Query: 267 LGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPI 326
           +     R   QV++EA I+EV+       G+ W  A  +N     IG+ S    +N   +
Sbjct: 404 IDKLDGR-RAQVMIEALIVEVSAKKAANFGVQWQSALGNNAV---IGTNSSLASANILAL 459

Query: 327 TSVL-----------PGLD-AIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRV 374
           T  L           PGL+  I   +GGQ  +        A+ +F  + GD NVLS+P +
Sbjct: 460 TQALATKNVAGITPSPGLNLGIAGKIGGQYIL-------GAIANFFNSDGDANVLSTPNL 512

Query: 375 TASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFS------GISLDVTPQ 428
              +N++A I +G +  +VT        G  A  S  + + PF +      G++L V P 
Sbjct: 513 LTLDNEEAKIVIGQNVPFVT--------GQYASTSGSVGINPFTTVERKDVGLTLRVRPT 564

Query: 429 IDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGG 488
           I++ G V + +      V+Q T K        +     ++ R  +S +  +DG +V++GG
Sbjct: 565 INENGTVKMTIFQETSTVDQNTAK--------DPNGPTTNKRSIESSVLVEDGGLVMLGG 616

Query: 489 LMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           L+  +  + V KVP  GD+P LG+LF+N  +   K+ L++ L+P V+
Sbjct: 617 LLSDDYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLMMFLRPAVM 663