Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

 Score =  107 bits (268), Expect = 1e-27
 Identities = 102/404 (25%), Positives = 174/404 (43%), Gaps = 45/404 (11%)

Query: 162 LTSITTGTITNTDTNNSNSSSSSSSSI-----------SSNSSSDGSSSNSNSNRSDARG 210
           L  +  G +T    + S + S S  +            ++N +S G+++ S++NR    G
Sbjct: 286 LAGVLRGLLTGESPDASGTGSGSVRAALGAGGMLGGAGAANGTSGGAANASSANRGSTGG 345

Query: 211 -GTEIETTNESDFWPLLEKAVAQLLG--------------GSGGQTVIVNPQAGVLTLRA 255
            GT + T        +   A A   G               +GG TV  +     L + A
Sbjct: 346 TGTGVSTMPSGGLRGVAGGASAGGTGTQAGTSGNSNGAAFSAGGVTVQADATTNTLIIAA 405

Query: 256 YPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGS- 314
                R +   +    QR   QV++E+ I+EVT  D  + GI W  A   NG   + G+ 
Sbjct: 406 PEPMYRSLRRVIDTLDQR-RAQVLVESLIVEVTERDASELGIQWM-AGGGNGRGVRAGTN 463

Query: 315 -GSITQDSNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSS 371
            G  T + N       +P    IG ++ G  N+  V    +   +   +  +   N+LS+
Sbjct: 464 FGGATLNPNARNTIEAMPRGLNIG-IVDGTVNLPGVGEILNLKMLARALQAKDGANILST 522

Query: 372 PRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDD 431
           P +   +N+ A I VG    +V   S    T  N+  +P  T+     G+ L++ PQI +
Sbjct: 523 PNILTLDNEAASIMVGKTVPFV---SGQYITNGNSSTNPFQTIQREDIGLKLNIRPQISE 579

Query: 432 QGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMK 491
            G V L ++  V  ++ Q           ++    ++ R  D+ I   DG ++V+GGLM+
Sbjct: 580 GGTVKLDIYQEVSTIDTQAS---------DISGIVTNKRALDTSILVDDGQIMVLGGLME 630

Query: 492 SNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
            +  +    VP LG +P +G+LFR   +   KT L++ L+P V+
Sbjct: 631 DSVANGTEAVPGLGALPVVGNLFRYDKRQRVKTNLMVFLRPYVI 674