Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 718 a.a., type IV pilus secretin PilQ from Variovorax sp. OAS795

 Score =  106 bits (265), Expect = 3e-27
 Identities = 123/550 (22%), Positives = 226/550 (41%), Gaps = 123/550 (22%)

Query: 26  AKQALNQAINETNSRQIDQLPPSVEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKAFFA 85
           A Q+ NQ + E  +R++D                LT       ++  +  +++E ++   
Sbjct: 245 AYQSENQFVVEVRARKVDPAK-------------LTQGVGYNGEKLSLNFQNIEIRSLLQ 291

Query: 86  SLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRT 145
            +   T ++     +VTG +TL L DV  D+AL ++       + K G V+ + P     
Sbjct: 292 VIADFTNFNIVTSDSVTGALTLRLKDVPWDQALDIIMQAKNLGMRKNGSVLWIAPK---- 347

Query: 146 VTIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNR 205
                D +  K         T   +    T +   + + + +I+   +  G+SS      
Sbjct: 348 -----DEINAKEKLEFEAKATIENLEPVRTQSFQLNYTKAIAIAQGLTGTGASSG----- 397

Query: 206 SDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLT--------LRAYP 257
               GG                       GGSG  T I++P+  V+         +   P
Sbjct: 398 ----GG-----------------------GGSGTTTRILSPRGSVIAESRTNQLFVSDIP 430

Query: 258 DEIRQVNEFLGISQQRMH---RQVILEAKILEVTLSDGYQQGINWS-----KAFSSNGAN 309
             + QV E +    Q++    RQV++EA+I+E + + G   G+        + F+S+  N
Sbjct: 431 SRLAQVAELI----QKLDIPVRQVLIEARIVEASDTFGKSLGVRLGGGIAGERFASSSGN 486

Query: 310 YKIG------------------SGSITQDSNGNPITSVLPGLDA--IGNLLGGQSNVVIS 349
              G                  S + T  +N N I   LP  DA   GN  G  + + + 
Sbjct: 487 RAFGNIGMMPVVSAGTNATGGASTATTTWTNSNFIN--LPAGDAGGTGNAAGAFA-ISLF 543

Query: 350 SGSFDAV----ISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDN 405
           + SF  +    IS +   G   ++SSPRV  ++  KA+I+ G +  Y             
Sbjct: 544 NSSFSRMLNLEISALEADGKGKLVSSPRVITADQTKALIEQGEEIPY-----------QQ 592

Query: 406 AQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLA 465
           A +S   +++   + + L+VTPQI  +GN++L      ++V +  + +   +        
Sbjct: 593 ATSSGATSISFRKAVLKLEVTPQITPEGNIIL-----TLDVSKDARGVNTSAGPA----- 642

Query: 466 RSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTE 525
             + +   + +  ++G  VVIGG+ +    +  S+VP LG+VP LG LFR   ++  KTE
Sbjct: 643 -INTKHVQTEVLVENGGTVVIGGIFELTETNDESRVPVLGEVPYLGALFRKRERVANKTE 701

Query: 526 LVILLKPTVV 535
           +++ + P ++
Sbjct: 702 MLVFITPKMI 711