Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., type II secretion system secretin GspD from Variovorax sp. OAS795

 Score =  110 bits (276), Expect = 2e-28
 Identities = 89/309 (28%), Positives = 153/309 (49%), Gaps = 30/309 (9%)

Query: 237 SGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQG 296
           +GGQ +  +P    L + A   + RQ+   +     R   QV++EA I+EV+       G
Sbjct: 384 TGGQ-IQADPSTNSLIITAPEPQYRQMRAVIDKLDGR-RAQVMIEALIVEVSAKKAANFG 441

Query: 297 INWSKAFSSN---GANYKIGSGSI---TQDSNGNPITSVLP--GLD-AIGNLLGGQSNVV 347
           + W  A  ++   G N  + S +I   TQ      +  V P  GL+  I   +GGQ  + 
Sbjct: 442 VQWQSALGNSAVIGTNSSLASANILALTQALATGDVKGVRPSTGLNLGIAGKIGGQYIL- 500

Query: 348 ISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT-DLSSVVGTGDNA 406
                  A+ +F  + GD NVLS+P +   +N++A I +G +  +VT   +S +GTG   
Sbjct: 501 ------GAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNVPFVTGQYASSLGTGG-- 552

Query: 407 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLAR 466
             +P  T+     G++L V P I++ G V + +      V+Q T   +  S         
Sbjct: 553 -INPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDQNT---INNSNG-----PT 603

Query: 467 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 526
           ++ R  +S +  +DG +V++GGL+  +  + + KVP  GD+P LG+LF+N  +   K+ L
Sbjct: 604 TNKRSIESSVLVEDGGLVMLGGLLSDDYNNTIEKVPLAGDIPVLGNLFKNEVRSRTKSNL 663

Query: 527 VILLKPTVV 535
           ++ L+P V+
Sbjct: 664 MMFLRPAVM 672