Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (281), Expect = 4e-29
 Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 44/311 (14%)

Query: 251 LTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANY 310
           L L A  D +  + E +G    R   QV++EA I+E+   DG   G+ W    S +   Y
Sbjct: 318 LVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQY 376

Query: 311 KIGSGSI------------------TQDSNGNPI---TSVLPG-----LDAIGNLLGGQS 344
                SI                    D+N N +   T+   G       A+ ++ G   
Sbjct: 377 GNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAA- 435

Query: 345 NVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGD 404
            V I+ G + A+I+ ++     N+LSSP +T  +N +A   VG +   +T   S  G+ +
Sbjct: 436 -VSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT--GSTAGSNN 492

Query: 405 NAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPL 464
           +   +P  T+     GI L V PQI++  +V L++       EQ+   +L  +  +++  
Sbjct: 493 D---NPFQTVDRKEVGIKLKVVPQINEGNSVQLNI-------EQEVSNVLGANGAVDVRF 542

Query: 465 ARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKT 524
           A+   R+ ++ +  +DG ++V+GGL+    ++  SKVP LGD+P LG LFR+T+   +K 
Sbjct: 543 AK---RQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKK 599

Query: 525 ELVILLKPTVV 535
            L++ +KPT++
Sbjct: 600 NLMVFIKPTII 610