Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 77/497 (15%)

Query: 49  VEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLN 108
           ++AD  P   ++   E K +    I  +D+  +     +     ++  +  +V G +TL 
Sbjct: 147 LKADEKPKPKSVLEKEGKLIS---INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLR 203

Query: 109 LTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTG 168
           L  V   + L ++  + G +   +G VI +          P + L  +       +    
Sbjct: 204 LDGVPWQQVLDIILQVKGLDKRVDGNVILI---------APKEELDLREKQALEKARLAE 254

Query: 169 TITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLEK 228
            + +  +     + + +S I++    +G     N N    RG   I+    S        
Sbjct: 255 ELGDLKSEIIKINFAKASDIAAMIGGEG-----NVNMLSERGSISIDERTNS-------- 301

Query: 229 AVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVT 288
                                 L +R  PD I  + E +  S     +QV +EA+I+ V 
Sbjct: 302 ----------------------LLIRELPDNIAVIREIIE-SLDIPVKQVQIEARIVTVK 338

Query: 289 LSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAIG-NLLGGQSNVV 347
             +  + G+ W    S+NG++   GS        G       P  + +  NL    +N  
Sbjct: 339 EGNLEELGVRWG-VMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANAS 397

Query: 348 --------ISSGSF-DAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 398
                   + SG+  D  +S +  +    ++SSPR+  +N Q A I+ GT+  Y+   SS
Sbjct: 398 SIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSS 457

Query: 399 VVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSE 458
              T    +A            +SL VTPQI     ++L +  +V +  +         E
Sbjct: 458 GASTVAFKKAV-----------LSLKVTPQITPDNRLVLDL--SVTQDRRGETVKTGTGE 504

Query: 459 EIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTT 518
            + +   R   +     +   +G+ VV+GG+ + +  + V KVP LGD+P LG LFR T 
Sbjct: 505 AVSIDTQRIGTQ-----VLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTY 559

Query: 519 KLTQKTELVILLKPTVV 535
           +   K+EL+I + P VV
Sbjct: 560 EQMGKSELLIFVTPKVV 576