Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 75.1 bits (183), Expect = 5e-18
 Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 30/265 (11%)

Query: 278 VILEAKILEVTLSDGYQQGIN-WSKAFSSNGANYKIGSGSITQ----DSNGN-PITSVLP 331
           V +E KI+E       Q G+N +S A + +G ++ + S S  Q    D N +  + +  P
Sbjct: 172 VQVEVKIVEFNKRVLKQAGLNLFSTAPNKHGFSFGVFSPSSLQSYGFDRNASFTVEASSP 231

Query: 332 GLDAIGNLLG-GQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDE 390
              A   LLG G++N+ ++ G  +         G   VL+ P + A + Q A    G + 
Sbjct: 232 LAQAFSLLLGFGKANIGLNLGLLEG-------NGLARVLAEPTLVALSGQSANFLAGGE- 283

Query: 391 YYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQT 450
                ++  +GT         I   PF  GI L V+P +     ++L V P   +++   
Sbjct: 284 -IPVPVAQGLGT-------TSIEYKPF--GIGLTVSPTVLSNQRIVLKVAPEASDLDYTN 333

Query: 451 KKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPAL 510
              L     + +P   +  R +D+ +   DG+  VIGGL+   T   V KVP LGD+P L
Sbjct: 334 AVTL---SGVAVPAITT--RRADTTVELGDGESFVIGGLVSRTTTSSVDKVPMLGDLPVL 388

Query: 511 GHLFRNTTKLTQKTELVILLKPTVV 535
           G +F+       + ELVI++ P +V
Sbjct: 389 GTVFKRQDYQQNERELVIVVTPHLV 413