Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 655 a.a., variant type II secretion system secretin EtpD from Escherichia coli ECRC102

 Score =  103 bits (256), Expect = 3e-26
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 39/309 (12%)

Query: 239 GQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGI 297
           G T+  + Q   L L   PD IR +     ISQ  + R QV++EA I E+  +DG   GI
Sbjct: 309 GVTIKSHEQTNALILTGAPDVIRDLENV--ISQLDIRRPQVLVEAIIAEIQDADGLNLGI 366

Query: 298 NWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVIS-------- 349
            W         N   G    T  S G PIT+++        +L    +  +S        
Sbjct: 367 QW--------VNKHAGVAQFT--STGLPITTMVQTRQ--NEILDSDQSNALSMFNGIAAG 414

Query: 350 --SGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQ 407
              G++  +++ ++T    ++L++P +   +N +A   VG +   ++   S   +GDN  
Sbjct: 415 FYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLS--GSQTTSGDNIF 472

Query: 408 ASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPL-AR 466
            + +        GI L V PQI++  +VLL       E+EQ+   +   +      L A 
Sbjct: 473 NTVERKTV----GIKLRVKPQINEGDSVLL-------EIEQEVSGVADTAVATTTDLGAT 521

Query: 467 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 526
            + R   + +   +G+ VV+GGL+  +     SKVP LGD+P LGHLFR  ++ T K  L
Sbjct: 522 FNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNL 581

Query: 527 VILLKPTVV 535
           ++ ++PT++
Sbjct: 582 MLFIRPTII 590