Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., general secretion pathway protein D from Escherichia coli ECOR38

 Score =  115 bits (289), Expect = 4e-30
 Identities = 123/452 (27%), Positives = 199/452 (44%), Gaps = 73/452 (16%)

Query: 134 KVIQ-VYPAGLRTV-TIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSSISSN 191
           +VIQ V  AG RT   IP+D        R L S+T  +  N      +   +   + S  
Sbjct: 197 EVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVI 256

Query: 192 SSSDGSSSNSNSNRSDARGGTEIETTNESDFWPL-------LEKAVAQLLG--------- 235
            S D  ++     R   R  +E+E +  S  + L       L   + Q+ G         
Sbjct: 257 VSGD-PATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEA 315

Query: 236 ----GSGGQTVIV--NPQAGVLTLRAYPD---EIRQVNEFLGISQQRMHRQVILEAKILE 286
               GSG + V +  +  +  L + A  D    ++ V E L I + ++H    +EA I+E
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVH----VEALIVE 371

Query: 287 VTLSDGYQQGINWSKAFS-----SNGANYKIGS------------GSITQDSNG----NP 325
           V        G+ W+   +     +NG    IG+            GS     NG    NP
Sbjct: 372 VAEGSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINP 431

Query: 326 ITSVLPGLDAIGNLLGGQSNVVIS--SGSFDAVISFMATQGDLNVLSSPRVTASNNQKAV 383
            T+    L  +  LL G S   +    G + A++  +      NVLS+P +T  +NQ+A 
Sbjct: 432 DTN--GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAF 489

Query: 384 IKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAV 443
             VG D   +T   S VG+ ++   +P  T+     GI L VTPQI++   V + +   V
Sbjct: 490 FMVGQDVPVLT--GSTVGSNNS---NPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEV 544

Query: 444 IEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPF 503
            +VE QT   +   E           R+  + + A DG+++V+GGLM     + V+KVP 
Sbjct: 545 SKVEGQTSLDVVFGE-----------RKLKTTVLANDGELIVLGGLMDDQAGESVAKVPL 593

Query: 504 LGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           LGD+P +G+LF++T    +K  L++ ++PT++
Sbjct: 594 LGDIPLIGNLFKSTADKKEKRNLMVFIRPTIL 625