Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECOR27

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 97/467 (20%), Positives = 191/467 (40%), Gaps = 79/467 (16%)

Query: 69  QRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYGFE 128
           Q+  +  +DV       +L +  + +  + P V+G ++L+LTDV   +AL  V    G  
Sbjct: 12  QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLI 71

Query: 129 VVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSSI 188
             +E  ++ V+    +                                N+N +   +   
Sbjct: 72  TRQEDNILSVHSIAWQ--------------------------------NNNIARQEAEQA 99

Query: 189 SSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQA 248
            + ++    + +     +DA                 L KA  +LL   G  TV  + + 
Sbjct: 100 RAQANLPLENRSITLQYADAGE---------------LAKAGEKLLSAKGSMTV--DKRT 142

Query: 249 GVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGA 308
             L LR     +  + +++      +  QV L A I+ +      + G+ W+ A     A
Sbjct: 143 NRLLLRDNKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLA----DA 197

Query: 309 NYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNV 368
            +  G G +T  + G+ + SV      +G  +G      I+    D  +S +  +  L++
Sbjct: 198 QHAGGVGQVT--TLGSDL-SVATATTHVGFNIGR-----INGRLLDLELSALEQKQQLDI 249

Query: 369 LSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQ 428
           ++SPR+ AS+ Q A IK G++  Y       V +G++   S +         + ++VTP 
Sbjct: 250 IASPRLLASHLQPASIKQGSEIPYQ------VSSGESGATSVEFKEAV----LGMEVTPT 299

Query: 429 IDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGG 488
           +  +G + L +H +    +    ++L +++   L + +  I   ++ +  K G+ + +GG
Sbjct: 300 VLQKGRIRLKLHIS----QNVPGQVLQQADGEVLAIDKQEI---ETQVEVKSGETLALGG 352

Query: 489 LMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           +           VP LGD+P  G LFR+  K  ++ ELV+ + P +V
Sbjct: 353 IFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 399