Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  100 bits (249), Expect = 2e-25
 Identities = 101/401 (25%), Positives = 174/401 (43%), Gaps = 58/401 (14%)

Query: 175 TNNSNSSSSSSSSISSNSS--------SDGSSSN---SNSNRSDARGGTEIETTNESDFW 223
           TNN+N S S   +  +  S        S GS S+   +N +   A GGT       +D  
Sbjct: 294 TNNNNPSGSPEPAGGNTMSMEAMLAQQSPGSMSSGQPANLDGQAASGGTTPAADFSNDSN 353

Query: 224 PLLEKAVAQLLGGSGGQTVIVNPQA------GVLTLRAYPDEIRQVNEFLGISQQRMHRQ 277
            +           S G T++   +         L + A P  ++Q    +     R H Q
Sbjct: 354 SMF----------SDGDTLVRQTRVHADRDNNALVVSAPPAAMQQAASIIQQLDVR-HEQ 402

Query: 278 VILEAKILEVTLSDGYQQGINWSKAF--SSNGANYKIGSGSITQDSNGNPITSVLPGLDA 335
           V++EA ++EV  ++G   GI W       SN  +  +G+G     S  NP+ + L G + 
Sbjct: 403 VLVEAIVVEVQKAEGLNLGIAWGNKNYGGSNFNSINVGNGF----SQANPLVNALKGTEG 458

Query: 336 IGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTD 395
              L+ G        G++  + + + +    N++++P V   +N +A   VG D   +T 
Sbjct: 459 ---LVAG-----FYHGNWGTLFNALESNKSNNIVATPSVVTLDNHRAEFNVGQDVPILT- 509

Query: 396 LSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILY 455
             S     DN       T+     GI   + P+I+  G +LL        + Q+   +  
Sbjct: 510 -GSQTTNNDNIFN----TVQRRTIGIKFSILPRINQSGTILL-------TISQEISSLSD 557

Query: 456 RSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFR 515
            ++      A  +IR  ++V++ +D + VVIGGL+     + V+KVP LGD+P LG++FR
Sbjct: 558 TAQVNNNLGAVFNIRTVNNVVQVQDNETVVIGGLLDDEKKETVNKVPLLGDIPWLGNVFR 617

Query: 516 NTTKLTQKTELVILLKPTVV---GVNTWQKELERSRSLLQE 553
            T+    K  L++ ++P ++   G  T Q     S ++  E
Sbjct: 618 YTSHNDDKRNLMLFIRPRIIRSDGAETVQARQGASSAVADE 658



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 61  TASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITL----NLTDVTLDE 116
           T +     +++     +VE K F A+  Q  + +  I P++TG+I++    +L +    +
Sbjct: 36  TPTPENASKKYSASFREVEIKEFVATAAQILKKNIIIDPSITGQISVRSYDDLNENQYAD 95

Query: 117 ALGVVRDLYGFEVVK-EGKVIQVYP 140
               V + YG+ VVK +   + V P
Sbjct: 96  FFINVMEAYGYSVVKIDNHTLNVVP 120