Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  138 bits (348), Expect = 6e-37
 Identities = 114/431 (26%), Positives = 208/431 (48%), Gaps = 56/431 (12%)

Query: 128 EVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSS 187
           E++++    QV   G + +     YL++ +    L  +  G    T  N ++SSS++S S
Sbjct: 254 EMIRQLDRKQVAQGGTKVI-----YLKYAKA-LDLIEVLAGN--GTSGNRNSSSSNASRS 305

Query: 188 ISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIV--- 244
            SS +S+ G +SN+NS+ S    G+   +++ S        +       SGG+T+++   
Sbjct: 306 SSSRTSNSGLNSNNNSSGSTNSSGSSSSSSSSSSSMGF--GSTFGSTSSSGGRTIVIQGK 363

Query: 245 ------NPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGI 297
                 + Q   L + A PD +R + +   I+Q  + R QV++EA I E+  +DG   GI
Sbjct: 364 EVTVRAHDQTNSLIITAPPDIMRDLEQV--INQLDIRRPQVLVEAIIAEIQDADGLNLGI 421

Query: 298 NWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLD----------AIGNLLGGQSNVV 347
            W        AN + G    T  + G PI++ + G D          A  + LG  + + 
Sbjct: 422 QW--------ANKRAGMTQFT--NTGIPISTAVIGTDQFRSDGTLTTAYASALGSFNGIT 471

Query: 348 IS--SGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDN 405
                G++  +++ ++     +VL++P +   +N +A   VG +   +T   + VG+G+N
Sbjct: 472 AGFYRGNWSMLLTALSRDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGNN 531

Query: 406 AQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPL- 464
              + +        GI L V PQI++  +VLL       ++EQ+   +   +      L 
Sbjct: 532 IFNTVERKTV----GIKLRVKPQINEGDSVLL-------QIEQEVSSVADSNSSTNSSLG 580

Query: 465 ARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKT 524
           A  + R  ++ +   +G+ VV+GGL+   T++   KVP LGD+P LG LFR+ ++   K 
Sbjct: 581 ATFNTRTVNNAVMVTNGETVVVGGLLDKTTIESNDKVPLLGDIPWLGSLFRSKSQSVNKR 640

Query: 525 ELVILLKPTVV 535
            L++ L+PT++
Sbjct: 641 NLMLFLRPTII 651