Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., type II secretion pathway protein D from Caulobacter crescentus NA1000 Δfur

 Score =  104 bits (260), Expect = 1e-26
 Identities = 103/358 (28%), Positives = 164/358 (45%), Gaps = 40/358 (11%)

Query: 198 SSNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVN-PQAGVLTLRAY 256
           +++S+   S+AR  T   T   +   P     VA     +G Q  I   P A  L + A 
Sbjct: 292 TTSSSRGLSNARTATGASTATTAPSAP-----VAATPSANGPQATIARFPGANALIINAP 346

Query: 257 PDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGA------NY 310
           P+  R + E +     R   QV++EA ++EVT     Q G+ +     +NG       NY
Sbjct: 347 PETQRTLAEVIRQLDVR-REQVLVEAIVVEVTDGTAKQLGVQFLLG-GTNGTIPFVATNY 404

Query: 311 KIGSGSI------TQDSNGNPITSVLPGLD--AIGNLL---GGQSNVVISSGS--FDAVI 357
              + S+         +     T  L  L   A+ +LL   G  S VV  SG   F A+I
Sbjct: 405 TNATPSLLPLVGAAATTTSGADTEALKSLRDAAVSSLLTASGVTSGVVGRSGDALFGAII 464

Query: 358 SFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPF 417
           + +      N+LS+P +   +N++A I VG +    T    V+G   ++ A+P  T+   
Sbjct: 465 NAVKKDTGSNLLSTPSIMTLDNEEARILVGQEVPITT--GEVLG---DSNANPFRTIQRQ 519

Query: 418 FSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIR 477
             GI L+V PQI+  G + L +     EV      +   S E+ +     + RE ++   
Sbjct: 520 NVGIQLEVKPQINAGGGITLFLRQ---EVSSVAGPVSVGSSELII-----NKREIETTAL 571

Query: 478 AKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
             DGD+VV+GGL+         + P LGDVP LG LFR+T +  +KT L++ ++P ++
Sbjct: 572 VDDGDIVVLGGLLDQQETQSAQRTPGLGDVPGLGALFRSTARERKKTNLMVFIRPRII 629



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 41/184 (22%)

Query: 234 LGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLG-ISQQRMHRQVILEAKILEVTLSDG 292
           L G  GQ V+ NP+  V+ +  Y D +R++   L  + Q R        A +  VTL+  
Sbjct: 146 LVGPQGQ-VVANPRGAVVVVADYADNVRRIRGLLAQVDQDR--------AMVHTVTLTHS 196

Query: 293 YQQGIN--WSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVISS 350
             + I    +   ++ GA  K G G++T          V+P +D+        SN V+  
Sbjct: 197 SAREIAQVLNDMLATPGAEGKSGRGAVT----------VVP-VDS--------SNSVLLR 237

Query: 351 GSFDAVISFMATQGDLNVLSSPRVTASNNQKAV-IKVGTDEYYVTDLSSVVGTGDNAQAS 409
           G  DAV   +    DL+     R  +S++ + V ++    E  +  L  +VG     QA+
Sbjct: 238 GDSDAVQRLLPVIADLD----RRAESSDDVRVVFLRHANAEQMLPVLQQLVG-----QAT 288

Query: 410 PDIT 413
             +T
Sbjct: 289 TSVT 292