Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., Type IV pilus biogenesis and competence protein PilQ precursor from Alteromonas macleodii MIT1002

 Score =  112 bits (279), Expect = 5e-29
 Identities = 116/490 (23%), Positives = 207/490 (42%), Gaps = 83/490 (16%)

Query: 58  DTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEA 117
           D L A +  T     +  +DV  +     + Q   ++      VTG +T++L+ V  D+A
Sbjct: 168 DALEAEKKYTGDPISLDFQDVPVRQVLQIIAQVNGFNLVTTDTVTGNVTISLSGVPWDQA 227

Query: 118 LGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTITNTDTNN 177
           L ++  + G +   EG ++ + PA   +       LQ K+    L S+ T    N   N 
Sbjct: 228 LDMILRVKGLDKRLEGNILLIAPAEELSAR-ETQALQSKKQVSDLASLHT---VNIPVNY 283

Query: 178 SNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGS 237
           + +++ ++                                       +L+     +L   
Sbjct: 284 AKAAALAT---------------------------------------ILKSTEGGILSER 304

Query: 238 GGQTVIVNPQAGVLTLR---AYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQ 294
           GG TV  + +   L +R   A  DE R+    L I      +QV++E++++ V      Q
Sbjct: 305 GGVTV--DERTNTLLIRDTLASIDEARKTINALDIPV----KQVLIESRMVTVLDDVDEQ 358

Query: 295 QGINW--SKAFSSNGANYKIGSGSITQD----SNGNPITSVLPGLDAIGNLLGGQSNVVI 348
            G+ W  S     NG +  + +          S  N +   LP   A G++ G Q   ++
Sbjct: 359 LGVRWGFSDRQDDNGVSGSLEAADTIAGGIVPSIDNRLNVNLPVTSAAGSI-GFQIASLV 417

Query: 349 SSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQA 408
                D  +S + ++    +++SPR+T +N  +A I+ GT+  YV   SS   + +  +A
Sbjct: 418 DGTILDLELSALESENKGEIIASPRITVANQHEAYIEQGTEIPYVQATSSGATSVEFKKA 477

Query: 409 SPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARS- 467
                       +SL VTP I     ++L      + V Q T     R E +      + 
Sbjct: 478 V-----------LSLKVTPHITPDNRIILD-----LVVTQDT-----RGETVSTSTGDAV 516

Query: 468 --SIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTE 525
               +E  + +  ++G+ +V+GG+ +  + D VSKVP  GD+P +G LFRN+++L QK E
Sbjct: 517 AIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPVVGALFRNSSQLQQKRE 576

Query: 526 LVILLKPTVV 535
           L+I + P +V
Sbjct: 577 LLIFVTPKIV 586