Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Type 3 secretion system secretin from Acinetobacter radioresistens SK82

 Score =  107 bits (266), Expect = 2e-27
 Identities = 114/484 (23%), Positives = 199/484 (41%), Gaps = 63/484 (13%)

Query: 69  QRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYGFE 128
           ++  +  +D+E +     L   T  +     +V G ITL L DV  D+AL ++      +
Sbjct: 281 KKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLRLKDVPWDQALDIILKTKNLD 340

Query: 129 VVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSSI 188
             + G VI + P       I  +  + K   +S   +   T       N   +      I
Sbjct: 341 KRRNGDVIWIAPVA---ELIKAEEEEAKAIAQSTRLMPLQT--EYIQLNYAKAVDIEKLI 395

Query: 189 SSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQA 248
           +   +S   S+N  SN ++A G +                 V  LL   G  T+ ++P+ 
Sbjct: 396 TQGRNSGNGSANGASNNTEALGDS-----------------VGSLLSPRG--TISIDPRT 436

Query: 249 GVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINW---SKAFSS 305
             L +     ++ Q+   + +    + +QV++EA+I+  +     + G+ W   S+  + 
Sbjct: 437 NTLIINDTAQKLDQIRRMIDLLDVAV-KQVMVEARIVRASTDFTKEMGVKWGILSQGITR 495

Query: 306 NGANYKIGSGSIT-----QDSNGNPITSVLPGLDA-IGNLLGGQSNVV-----ISSGSFD 354
           N +    GS +        D +G         L+  +G    G S +      +S    D
Sbjct: 496 NNSLLVGGSETTLWNLRDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLD 555

Query: 355 AVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITL 414
             +S +   G   V+S+P+V  ++ Q+A +  GT   Y     S  G G NA     ++ 
Sbjct: 556 LELSALQADGYGEVISTPKVLTADKQQARVASGTQIPY----QSSEGGGANA-----VST 606

Query: 415 TPFFSG-ISLDVTPQIDDQGNV--LLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRE 471
           T F    +SL+VTP I   G +  LL++          T +I     EI           
Sbjct: 607 TEFVDATLSLNVTPSITPDGKIQMLLNITSDTPGNPTPTGQIAINKNEI----------- 655

Query: 472 SDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLK 531
            ++ +   +G+ VV+GG+ +  T +  +KVP LGD+P +G LFR   K   K EL+I + 
Sbjct: 656 -NTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSNNKRELLIFVT 714

Query: 532 PTVV 535
           P +V
Sbjct: 715 PRIV 718