Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  121 bits (303), Expect = 1e-31
 Identities = 105/441 (23%), Positives = 191/441 (43%), Gaps = 10/441 (2%)

Query: 204 EALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESAL--LESGAHGG 261
           +A+++++E+L+    E++     +R++++ D LTG +NR  ++ +L + +  LE    G 
Sbjct: 209 QAMNQMVEKLKALFTEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARAGY 268

Query: 262 VMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDA--ILSRYYEDVFALFIPH 319
           +++LRV  L         +  D+ +  VGE L      YP+   ++SR     FA+  P 
Sbjct: 269 LLLLRVQGLAGLNARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPG 328

Query: 320 QGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQ 379
              ++   +A      ++ ++       D    IG+  +  G+    ++   + AL  A+
Sbjct: 329 MVHEEAVHLAQALEATLQSLHETGASDIDPVACIGLAPFSPGDSPQALLKLADEALARAE 388

Query: 380 LQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYE 439
            Q    W   ++            W    +Q        L+ Q    I     +  LH++
Sbjct: 389 NQPTPGWVCLEQGVAAVAADSQHAWHERLDQAFINGHFELFFQPV--IECASSQRVLHHK 446

Query: 440 LFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEPLSVNLHVVP 499
           + +R++D Q   L A RF   LE  G+   LD  V   V++ L+  + V  L++NL    
Sbjct: 447 VISRLRDGQGEALPAGRFLPWLERFGWMPRLDVLVLEKVLAHLRGHDQV--LALNLSAAT 504

Query: 500 FNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQA 559
             D +  + +  EL+    +L   L FE  E  L      +  + R L GLG  + + + 
Sbjct: 505 LADPKALQRVF-ELLGQNAALGPRLVFEIGEEQLPEQAA-LEQLTRRLHGLGFGLALQRF 562

Query: 560 GRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETT 619
           G        +  L + YLK+  S I+ ID     +LF+ ++          ++A  VET 
Sbjct: 563 GGRFSMIGNLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETE 622

Query: 620 QEWQTLQMLGVSGVQGRLFDE 640
            E   L  +GV G+QG+L  E
Sbjct: 623 GERLVLLEMGVGGIQGQLVGE 643