Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1229 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score =  104 bits (259), Expect = 3e-26
 Identities = 106/442 (23%), Positives = 194/442 (43%), Gaps = 27/442 (6%)

Query: 219  ERSRFDTFIRSQTFLDQLTGTANRVLYDSKL-----ESALLESGAHGGVMMLRVDDLESA 273
            ER R D  IR   + D +TG  NR+L   +L     +S L ++G  G +M + +D+ ++ 
Sbjct: 781  ERKRTDAQIRQLAYYDTMTGLPNRLLLQDRLAAHIHKSQLKKTG--GALMFIDIDNFKTL 838

Query: 274  REESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAI 333
             +       D  +IEV + + + V+R     +SR   D F + +    S    Q   QA 
Sbjct: 839  NDTHGHAVGDALLIEVAKRIKHSVRRQDT--VSRLGGDEFVVVLDSLSSA-ADQAEKQAR 895

Query: 334  KLIERINPP--EPLPEDNWFH-----IGVTMYQ-EGERRGRIIDEMETALKSAQLQGVNA 385
            K+ E+I     +P   D++ H     IGV ++  +  +   ++   + A+  A+  G N 
Sbjct: 896  KICEKIVGAFKKPFKLDHYQHYTTPSIGVVLFDPDMSQTDELLRRADMAMYKAKEAGRNG 955

Query: 386  WSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQ 445
            + RF   +   E R  V       + ++  E +L+ Q  Y    N + + +  E   R Q
Sbjct: 956  Y-RFFDVQMETELRQRVALEAELHEAIQKREFVLHLQPQY----NRQHQMVGAEALLRWQ 1010

Query: 446  DPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRY 505
             P++G++    F +  E  G    L R V     + L++      LS  +  V  + K+Y
Sbjct: 1011 HPERGLIMPGEFIALAEASGQIVALGRWVLQQACALLQQWAFHPQLSQMVLAVNVSPKQY 1070

Query: 506  ARW-IRNELMQMPFSLRTA---LSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGR 561
             +     E+ Q+      A   L  E +E+ L+++++ +   +  L   G    +   G 
Sbjct: 1071 LQSAFVTEVQQLLTEANIAPGRLQLELTESMLIDNVEDIIAKMTALKAAGVSFSLDDFGT 1130

Query: 562  TIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQE 621
               S  Y+K    + LK+ +S ++ + Q  ++Q  V +++ +    Q +V+A GVET  +
Sbjct: 1131 GYSSLSYLKRFPFDQLKIDQSFVRDMLQGQDHQSIVNAIISLGISLQLDVLAEGVETEAQ 1190

Query: 622  WQTLQMLGVSGVQGRLFDEEQQ 643
               L  LG +  QG  F   Q+
Sbjct: 1191 LDLLTRLGCNTFQGYYFSVPQR 1212