Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., RNase E specificity factor CsrD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  345 bits (884), Expect = 5e-99
 Identities = 213/639 (33%), Positives = 334/639 (52%), Gaps = 14/639 (2%)

Query: 10  LKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAAY 69
           ++L+T+  AF+T+     +F+  +G +LSF    Q      +Q     +D  +   D   
Sbjct: 1   MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQATATAIDTHLVTHDIV- 59

Query: 70  SMQRWMPKMLQASGIIEMQLTSEAGPIY---RFKDTTNTIEASRLHQVALPLKRNPGYVM 126
           S+   + +++ AS I+ + L      +Y   R +       +    ++ +PL ++PG  +
Sbjct: 60  SLTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGTSDMYRELVVPLIKHPGMSL 119

Query: 127 HFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGR 186
                 P  NY +SL      TLA+  IV  L   ++WL+ QL G ELLE R   IL G 
Sbjct: 120 RLAYQDPMGNYFHSLITTAPLTLAIGFIVLILFLSVRWLQRQLSGQELLEIRSTRILNGE 179

Query: 187 VEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYD 246
              + +G   EWP   S ALD L+ E+Q A ++RSR DT IRS    D  TG  NR+ +D
Sbjct: 180 RGANVRGSVYEWPARTSSALDVLLSEIQFAHEQRSRLDTLIRSYAAQDTKTGLGNRLFFD 239

Query: 247 SKLESALLES---GAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDA 303
           ++L + L +    G HG VMM+R+ D    R+       +E +  +   LS  + RYP +
Sbjct: 240 NQLATLLEDQEKVGVHGVVMMIRLPDFNLLRDSLGGNQAEEQMFMLINLLSTFIMRYPGS 299

Query: 304 ILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGER 363
           +L+RY+   FA+ +PH+  K+   +A Q +K ++ +   + L  D+  HIG+  ++ G+ 
Sbjct: 300 LLARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDALPANKMLDRDDMVHIGICAWRSGQS 359

Query: 364 RGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQA 423
             ++++  E A ++A LQG N+W+ +      ++ RG+VRWRTL EQ+L      LY++ 
Sbjct: 360 TEQVMEHAEAAARNAALQGGNSWAIYDDTLP-EKGRGNVRWRTLIEQMLNRGGPRLYQKP 418

Query: 424 CYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLK 483
               +   E    H EL  RI D ++ +  A      L+  G     DR   S +++ L 
Sbjct: 419 ----AVTREGRVHHRELMCRIYDGKEEVSSAEYMPMVLQ-FGLSEEYDRLQISRLITLLG 473

Query: 484 RSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPI 543
                E L++ L V      R+ RW+R+ LMQ   S R  +  E +EA +  H+  ++PI
Sbjct: 474 YWP-DENLAMQLTVESLIRPRFQRWLRDTLMQCEKSQRNRIIIELAEADVCQHISRLQPI 532

Query: 544 IRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGV 603
           +R++  LG ++ V QAG T+VST +IK L V  LKLH SL++ I++R ENQL V+SLV  
Sbjct: 533 LRLVNALGVRVAVTQAGLTLVSTSWIKALNVELLKLHPSLVRNIEKRTENQLLVQSLVEA 592

Query: 604 CGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQ 642
           C GT  +V A GV +  EWQTL   GV+G QG  F   Q
Sbjct: 593 CAGTPTQVYATGVRSRGEWQTLTKRGVAGGQGDFFASSQ 631