Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  347 bits (891), Expect = e-100
 Identities = 218/658 (33%), Positives = 345/658 (52%), Gaps = 18/658 (2%)

Query: 10  LKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAAY 69
           ++L+T+  AFVT+     +F+  LG +LSF    Q   +H +Q +   +D  +   D + 
Sbjct: 1   MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSV 60

Query: 70  SMQRWMPKMLQASGIIEMQLTSEAGPIYRF--KDTTNTIEASRL-HQVALPLKRNPGYVM 126
            ++  + +++ ++ I+ + L      +Y      +   + +S L  ++++PL ++PG  +
Sbjct: 61  -LRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSL 119

Query: 127 HFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGR 186
                 P  NY +SL      T A+  I+  L   ++WL+ QL G ELLE R   IL G 
Sbjct: 120 RLVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGE 179

Query: 187 VEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYD 246
              +  G   EWP   S ALD L+ E+Q+AR++ SR DT IRS    D  TG  NR+ +D
Sbjct: 180 RGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFD 239

Query: 247 SKLESALLES---GAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDA 303
           ++L + L +    G HG VMM+R+ D     +      ++E    +   LS  + RYP A
Sbjct: 240 NQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGA 299

Query: 304 ILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGER 363
           +L+RY+   FA  +PH+  K+   +A Q IK ++ +   + L  D+  HIG+  ++ G+ 
Sbjct: 300 LLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQD 359

Query: 364 RGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQA 423
             ++++  E+A ++A LQG N+W+ +      ++ RG+VRWRTL EQ+L      LY++ 
Sbjct: 360 TEQVMEHAESATRNAGLQGGNSWAIYDDSLP-EKGRGNVRWRTLIEQMLSRGGPRLYQKP 418

Query: 424 CYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLK 483
               +   E +  H EL  RI D  + +  A      L+  G     DR   S ++  L 
Sbjct: 419 ----AVTREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQ-FGLSEEYDRLQISRLIPLL- 472

Query: 484 RSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPI 543
           R    E L++ + V      R+ RW+R+ LMQ   S R  +  E +EA +  H+  ++P+
Sbjct: 473 RYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPV 532

Query: 544 IRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGV 603
           IR++  LG ++ V QAG T+VST +IK+L V  LKLH  L++ I++R ENQL V+SLV  
Sbjct: 533 IRLVNALGVRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEA 592

Query: 604 CGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQMLPPLPPEPLKRPPRLSV 661
           C GT  +V A GV +  EWQTL   GV+G QG  F   Q    PL     K   R SV
Sbjct: 593 CSGTSTQVYATGVRSRSEWQTLIQRGVTGGQGDFFASSQ----PLDTNVKKYSQRYSV 646