Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., diguanylate cyclase (GGDEF) domain from Enterobacter asburiae PDN3

 Score =  353 bits (906), Expect = e-101
 Identities = 211/641 (32%), Positives = 343/641 (53%), Gaps = 14/641 (2%)

Query: 10  LKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAAY 69
           ++L+T+  AF+T+     +F+  LG +LSF    Q+ L + +Q +  V+D  +       
Sbjct: 1   MRLTTKFSAFITLLTGLTIFVTLLGCSLSFYTAIQDKLVNRVQSVASVIDTRLLTTPLP- 59

Query: 70  SMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEA---SRLHQVALPLKRNPGYVM 126
           ++ R + +++    I+++ +      +   + + +   A   S+  +V +   +NPG  +
Sbjct: 60  ALSRELDELMVPVDIVQIDIQQGKHRVLSHERSGSYRPAGVVSQYREVTVHSLKNPGMTI 119

Query: 127 HFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGR 186
           H   + P  +Y  S+      T+AV  IV  +   ++WL+ QL G ELLE R   IL G 
Sbjct: 120 HMVYLDPMASYFRSMMTTAPLTVAVAFIVLLIFLSVRWLRRQLSGQELLEMRSVRILNGE 179

Query: 187 VEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYD 246
                +G   EWP  AS ALD L+ E+Q A  +RSR DT IRS    D  TG  NR+ +D
Sbjct: 180 RGPQVRGSVHEWPSRASSALDTLLSEIQFASDQRSRMDTLIRSYAAQDNKTGLNNRLFFD 239

Query: 247 SKLESALLES---GAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDA 303
           ++L + L +S   G HG VMM+R+ D +  R+   +R  +E +  +   LS  + RYP A
Sbjct: 240 NQLATLLDDSEKVGTHGVVMMIRLPDFDLLRDTWGQRVAEENLFTLINLLSTFIMRYPGA 299

Query: 304 ILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGER 363
           +L+RY+   FA+ +PH+  K+   +A+Q +K ++ +   + L  D+  H+G+  ++ G+ 
Sbjct: 300 LLARYHRSDFAVLLPHRTLKESESIASQLLKAVDALPQSKMLDRDDMVHMGICAWRGGQS 359

Query: 364 RGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQA 423
             ++++  E A ++A LQG N W+ +      ++ RG+VRWRTL EQ+L      +Y++ 
Sbjct: 360 TEQVMEHAEAATRNAVLQGANGWAVYDDSLP-EKGRGNVRWRTLIEQMLSRGGPRIYQKP 418

Query: 424 CYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLK 483
               + N      H EL  RI D  + ++ A      L+  G     DR   + ++ FL 
Sbjct: 419 AVMKNGNVH----HRELMCRIFDGTEEVISAEYLPMVLQ-FGLSEEYDRQQITRLIPFLS 473

Query: 484 RSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPI 543
                E L++ + V      R+ RW+R+ LMQ   S R  + FE +EA +  H+  +RP+
Sbjct: 474 FWP-EENLALQVTVESLIRPRFQRWLRDTLMQCEKSQRKHIIFELAEADVGQHISRLRPV 532

Query: 544 IRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGV 603
           +R++  LG +I V QAG T+VST +IK+L V  LKLH  L++ I++R ENQL V+SLV  
Sbjct: 533 VRLINALGARIAVTQAGLTLVSTSWIKELDVELLKLHPGLVRNIEKRTENQLLVQSLVEA 592

Query: 604 CGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQM 644
           C GT+ +V A GV +  EWQ L   GV G QG  F   Q +
Sbjct: 593 CKGTRTQVFATGVRSRSEWQMLTARGVMGGQGDFFAASQPL 633