Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 723 a.a., EAL domain-containing protein from Dickeya dianthicola ME23

 Score = 93.6 bits (231), Expect = 3e-23
 Identities = 108/457 (23%), Positives = 196/457 (42%), Gaps = 26/457 (5%)

Query: 219 ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVMMLRVDDLESAREESP 278
           ER R++  +  Q   D LTG ANR L  S LE  +L++G    +M++ +D  +   +   
Sbjct: 284 ERQRYEERLFLQAHRDPLTGLANRTLLTSTLEQ-VLKNGEPTAIMIIDLDGFKDINDSLG 342

Query: 279 KRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIER 338
             + DE +  V + L N V      +++R   D FA+ +P Q   D +QVA  A K+I  
Sbjct: 343 HTSGDEILSSVAKRLQNNV--CSGDLVARMGGDEFAILLPKQN--DESQVAILAEKIIYD 398

Query: 339 INPPEPLPE---DNWFHIGVTMYQ-EGERRGRIIDEMETALKSAQLQGVNAWSRFQKP-K 393
           I+    + +   +    IG+ MY   G     ++   + AL  A+  G N +  F +  +
Sbjct: 399 ISQAVSVDDKQINTSASIGLVMYPAHGTTVQDLLTSADLALYQAKADGRNCYRFFTRELR 458

Query: 394 QLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQGILK 453
           ++ + R + +    F +    EE  ++ Q    +  +   + +  E   R + P +G+L 
Sbjct: 459 EVFQARHAFQLE--FIRAYEQEEFEVFYQPQVSLVNS---KVVGAEALLRWRHPYKGLLG 513

Query: 454 ASRFSSALETVGYEAMLD----RAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRYARWI 509
            + F SALE   +   +     R+       + +       +S+NL    F+    A+ I
Sbjct: 514 PAAFMSALERGPWAERIGDWVVRSACQQASDWCRSGAGNFRISINLFAAQFHSGMLAQKI 573

Query: 510 RNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVSTHYI 569
           +  L Q       AL  E +E  ++ H + M   +  L   G  I     G    S   +
Sbjct: 574 KEVLTQTGLK-PGALELEITENIILRHDENMMKPLNELRNSGVGIAFDDYGTGYASLSML 632

Query: 570 KDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTLQMLG 629
           K   V  LK+ ++ ++ + +   +   VR+++ +      +V+A GVET ++ + L   G
Sbjct: 633 KHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAEGVETQEQSERLLNKG 692

Query: 630 VSGVQGRLFDEEQQMLPPLPPEPLKRPPRLSVKPIGK 666
               QG LF        P+P E  ++   L   P+ +
Sbjct: 693 CEQAQGYLFGR------PMPAEEFEKLLGLEDAPLAQ 723