Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., RNase E specificity factor CsrD from Dickeya dadantii 3937

 Score =  358 bits (920), Expect = e-103
 Identities = 221/640 (34%), Positives = 351/640 (54%), Gaps = 26/640 (4%)

Query: 12  LSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEM--EDPDAAY 69
           L+ R+   +TM    A+ ++ +    SF    Q+ + H L+ +   +D+ +  + PD   
Sbjct: 3   LTVRISILMTMLTTLAVVLMLVSSIFSFVCYSQQRMEHQLRAVAASIDQALLVQPPD--- 59

Query: 70  SMQRWMPKMLQASGIIEMQLTSEAGPIYRFKD----TTNTIEASRLHQVALPLKRNPGYV 125
           S+Q W+P +++A+GI+E+++      +Y  +     +     A       L L  +    
Sbjct: 60  SIQFWLPAVMKAAGIVELEIRDGHESLYLLRLPEMLSDGADRALLYRHTRLSLLHHTDVK 119

Query: 126 MHFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAG 185
           ++   V P       L++  S  L +L+I   +  G++WL+ Q+ G E LE R R ILAG
Sbjct: 120 VNVTYVDPLFGTPRYLKSTLSIVLVILVIAVTVFHGVRWLRRQMAGQEQLERRARRILAG 179

Query: 186 RVEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLY 245
             +    G   EWP TAS ALD+L+ +L +AR+ RSR DT IRS    D  TG  NR+ +
Sbjct: 180 ERDTVMHGSVHEWPATASGALDQLLLDLAEAREARSRVDTLIRSFAAQDAQTGLNNRLFF 239

Query: 246 DSKLESALLES---GAHGGVMMLRVDDLESARE-ESPKRTLDEFIIEVGECLSNIVQRYP 301
           +++L + L +    G HG VMM+R+ D ++ +E       L+E+   +   LS  V RYP
Sbjct: 240 ENQLATQLEDPEDVGTHGVVMMIRLPDFDTLQETHGYGGVLEEYRNTLINLLSTFVLRYP 299

Query: 302 DAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEG 361
            A+L+RYY   F + +PH+  K+   +A+Q +K I+ +     +  ++  HIG++ Y  G
Sbjct: 300 AALLARYYHSDFTVLLPHRTLKEADSIASQLVKAIDILPVTPLIDREDILHIGISAYHGG 359

Query: 362 ERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYR 421
           +   ++++ +E A ++A LQG N W  + + +  ++ RGSV+WRTL E  L      LY+
Sbjct: 360 QTTEQVMESVEDATRNAVLQGGNGWCVYDR-RVPEKGRGSVKWRTLLEHTLLRGGPRLYQ 418

Query: 422 QACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALE---TVGYEAMLDRAVFSSV 478
           +    I+ +GE    H E+F+RI D  Q +L+A       +   T GY+  L   V +  
Sbjct: 419 KPA--ITRDGEVH--HREMFSRIYDGTQELLEAEYMPLVRQLGLTSGYDRQLINRVIALT 474

Query: 479 VSFLKRSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLD 538
           VS+ + S L  P++V+  +     + + RW+R  L+Q P   R  L FE +EA +  ++ 
Sbjct: 475 VSW-QDSVLAFPITVDSLL----QRPFLRWLRETLLQCPKRQRERLLFELAEADVCQYIG 529

Query: 539 YMRPIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVR 598
            +RPI+ M+ GLGC++ V QAG T+VST YIK L+V  +KLH  L++ +D+R ENQLFV 
Sbjct: 530 RLRPILAMITGLGCRLAVTQAGLTLVSTAYIKSLQVEVIKLHPGLVRSLDKRPENQLFVS 589

Query: 599 SLVGVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLF 638
           SL   C GT A+V A GV T +EWQTL   GV G QG LF
Sbjct: 590 SLTEACKGTHAQVFAAGVRTREEWQTLLDKGVCGGQGDLF 629