Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., Cyclic di-GMP phosphodiesterase Gmr from Alteromonas macleodii MIT1002

 Score =  117 bits (294), Expect = 1e-30
 Identities = 108/450 (24%), Positives = 198/450 (44%), Gaps = 23/450 (5%)

Query: 199 PFTA-----SEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESAL 253
           PFT      ++A+++L   ++   +E S+     ++Q + D LTG  NR  +   + +AL
Sbjct: 201 PFTQELTFITQAVNKLSSSVEGMFKELSQKAEHFKAQAYEDSLTGVQNRSAFTRHM-NAL 259

Query: 254 LESGAH---GGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAI-LSRYY 309
           L S AH   G ++++R+  L +       +  D ++  V   L    +   +   L R  
Sbjct: 260 LSSTAHSDEGYIVIIRLAHLNAINTSLGAQEGDNYVTSVANILKQFSKESAETTHLFRLS 319

Query: 310 EDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIID 369
              FAL       ++ +       + +   NP +      W  +GV  + + +    I++
Sbjct: 320 GADFALVTEAISKRECSNKIEDLSETLVHCNPLKDGIRSVW--MGVAQFSDKQSFSEIME 377

Query: 370 EMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISA 429
             ++AL +A  Q  N W   Q   +L     +  WR     +L  +   +  Q    I+ 
Sbjct: 378 NADSALMAATKQA-NGW---QFASELSHLHSNTAWRERLNVILEQQYADMLIQPVMSIAE 433

Query: 430 NGEREFLHYELFARIQDPQQG-ILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELV 488
           N      ++E FAR +D + G ++  S+   A E +     +D+ V + V  F K S+  
Sbjct: 434 NTPS---YFEAFARFKDKESGSVIPMSQLIPASERLNLIPEVDKLVATLV--FKKLSQAK 488

Query: 489 EPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLA 548
             +++N+      +  +  W+  +L Q   +L T L FEF ++ L++H D      + L 
Sbjct: 489 CDVAINIANASLANSHFRTWLVAQLNQNT-ALCTKLVFEFEDSALIHHKDDTISFCKTLM 547

Query: 549 GLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQ 608
            LGC++ +   G  + S   ++ ++ +++K+   L K I    +NQLFV SL+ +  G  
Sbjct: 548 TLGCRVTIEHFGENLASLAGLRAIQPHFVKISGKLTKDIHTDKDNQLFVSSLLSIARGLN 607

Query: 609 AEVVAVGVETTQEWQTLQMLGVSGVQGRLF 638
             V+A  VE   E   L  L V+  QG  F
Sbjct: 608 INVIAELVENEAESVALTQLDVAYQQGFYF 637