Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 849 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score = 99.4 bits (246), Expect = 6e-25
 Identities = 97/436 (22%), Positives = 188/436 (43%), Gaps = 24/436 (5%)

Query: 214 QDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVMMLRVDDLESA 273
           +D  Q+R   + +I  Q   DQLTG  N++ ++  LE    E      ++ + +DD  S 
Sbjct: 407 EDITQQRIH-EEYIEYQNTHDQLTGLLNQINFEKVLEQTF-EKQKLLTLLYIDLDDFSSM 464

Query: 274 REESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAI 333
            +       ++ I  +   L + ++  PD +LSRY ED F L I  +G  D  ++ T+A 
Sbjct: 465 NDSLGYYVGNKVIKNIASRLKDFLK--PDEVLSRYAEDEFVLLI--KGQHDHKKITTRAA 520

Query: 334 KLIERINPPEPLPEDNWFH----IGVTMYQEG-ERRGRIIDEMETALKSAQLQGVNAWSR 388
            +++ I+ P  + +D+  H    IG+ +     +    ++     A++ A+ QG N W  
Sbjct: 521 NILDLISEPFQV-DDHTLHLSASIGIVINNSFIQCASELLYRSTLAMREAKRQGRNTWHC 579

Query: 389 FQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQ 448
           +++  ++  +      R    + ++ ++  L+ Q   +      +     E   R   P+
Sbjct: 580 YEESNKISPNLDYAHLRLELMEAVKKKQFTLFYQPLIKPLTGVVQGV---EALIRWYHPE 636

Query: 449 QGILKASRFSSALETVGYEAMLDRAVFSS----VVSFLKRSELVEPLSVNLHVVPFNDKR 504
           +G +    F    E  G    + + V  +    +  + K  +    +SVN+  + F    
Sbjct: 637 RGYIFPDFFIPLAERTGQIVNIGQWVLETACLDIAKWNKAHDSQLTVSVNISPLQFGRAG 696

Query: 505 YARWIRNELM--QMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRT 562
           +   ++  L   Q+P  L   L  E +E  +++  D    I++ +  LG  +V+   G  
Sbjct: 697 FLEELQKALKISQLPAEL---LKIEITEGVIISGADRAIEILKSIRALGVHVVIDDFGTG 753

Query: 563 IVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEW 622
             S  Y++ L +  +KL RS I  +    ++   VRS++ +      EVVA GVET ++ 
Sbjct: 754 YSSLSYLRLLPITQIKLDRSFIVNLTISVQDAAIVRSIIFLAHQLNLEVVAEGVETLEQA 813

Query: 623 QTLQMLGVSGVQGRLF 638
             L        QG  +
Sbjct: 814 SLLYQQDCDLFQGYFY 829