Pairwise Alignments

Query, 214 a.a., helix-turn-helix transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 221 a.a., Transcriptional regulatory protein DegU from Pseudomonas lactucae CFBP13502

 Score = 56.2 bits (134), Expect = 5e-13
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 22/177 (12%)

Query: 43  LLREYQSDKHKILLLD------HAENGLIRQQLGPLKLTSPYFETILFNVEKRLRTE-DL 95
           L+   + D   ++LLD      H  NGLI      L+  +P    ++ + E+  +     
Sbjct: 40  LVLTQEHDDLDLILLDLNMPGMHGLNGLIN-----LRNEAPTIPVVIVSAEQDKQIVLQA 94

Query: 96  LTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHV-SSQLLHYYRY-----AFQSHQV 149
           +T+G + G    +     +   + +I+NG  +LP  +  +Q    +R       F    +
Sbjct: 95  ITYGAV-GFITKSSPRVQMTEAIQQILNGNVYLPPDIIRTQKTGTHRRLNENPGFAPELL 153

Query: 150 QATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAI 206
           QA   LT +++ +L  +  G SN QIA  L I+E TVK+H+  I +KLNV NRV+AI
Sbjct: 154 QA---LTRKQLLVLERMTKGESNKQIAYTLEIAETTVKAHVSAILRKLNVHNRVQAI 207