Pairwise Alignments

Query, 214 a.a., helix-turn-helix transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., Transcriptional regulator CsgD for 2nd curli operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  101 bits (252), Expect = 9e-27
 Identities = 65/211 (30%), Positives = 111/211 (52%), Gaps = 4/211 (1%)

Query: 4   ANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENG 63
           +++  T+ L+T         +Q   + L +   +   +R L +  +    ++ +  A+  
Sbjct: 7   SSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLEDISAGCIVLMDMMEADKK 66

Query: 64  LIRQQLGPLKLTSPYFETILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIIN 123
           LI      L   +   +T+L N        ++  + ++ G+FYA ED   +  GL  I+ 
Sbjct: 67  LIHYWQDNLSRKNNNIKTLLLNTPDDYPYREIENWPHINGVFYATEDQEHVVSGLQGILR 126

Query: 124 GQNWLPRHVSSQLL-HYYRYAFQSHQVQATVDLTAREIQILRCLQTGASNMQIAENLFIS 182
           G+ +  + ++S L+ H   Y + S +   +  LT RE +IL  L+ GASN +IA +LFIS
Sbjct: 127 GECYFSQKLASYLITHSGNYRYNSTE---SALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 183 EFTVKSHLYQIFKKLNVKNRVKAIAWVNQNL 213
           E TVK+HLY +FKK+ VKNR +A++W N NL
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDNL 214