Pairwise Alignments

Query, 214 a.a., helix-turn-helix transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., transcriptional regulator CsgD from Escherichia coli ECRC100

 Score =  102 bits (253), Expect = 7e-27
 Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 4/209 (1%)

Query: 6   YARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLI 65
           +  T+ L+T         +Q   + L +   +   +R L +  S    +L +  A+  LI
Sbjct: 9   HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDMMEADKKLI 68

Query: 66  RQQLGPLKLTSPYFETILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQ 125
                 L   +   + +L N  +     D+  + ++ G+FYA ED   + +GL  ++ G+
Sbjct: 69  HYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128

Query: 126 NWLPRHVSSQLL-HYYRYAFQSHQVQATVDLTAREIQILRCLQTGASNMQIAENLFISEF 184
            +  + ++S L+ H   Y + S +   +  LT RE +IL  L+ GASN +IA +LFISE 
Sbjct: 129 CYFTQKLASYLITHSGNYRYNSTE---SALLTHREKEILNKLRIGASNNEIARSLFISEN 185

Query: 185 TVKSHLYQIFKKLNVKNRVKAIAWVNQNL 213
           TVK+HLY +FKK+ VKNR +A++W N NL
Sbjct: 186 TVKTHLYNLFKKIAVKNRTQAVSWANDNL 214