Pairwise Alignments

Query, 214 a.a., helix-turn-helix transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., transcriptional regulator CsgD from Escherichia coli ECOR38

 Score =  102 bits (254), Expect = 5e-27
 Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 16/215 (7%)

Query: 6   YARTIYLLTTQPKALHPSIQAAI------EQLNLPVPVIEPERLLREYQSDKHKILLLDH 59
           +  T+ L+T       PS+QAA       + L +   +   +R L +  S    +L +  
Sbjct: 9   HGHTLLLITK------PSLQAAALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDMME 62

Query: 60  AENGLIRQQLGPLKLTSPYFETILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLG 119
           A+  LI      L   +   + +L N  +     D+  + ++ G+FYA ED   + +GL 
Sbjct: 63  ADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNGLQ 122

Query: 120 EIINGQNWLPRHVSSQLL-HYYRYAFQSHQVQATVDLTAREIQILRCLQTGASNMQIAEN 178
            ++ G+ +  + ++S L+ H   Y + S +   +  LT RE +IL  L+ GASN +IA +
Sbjct: 123 GVLRGECYFTQKLASYLITHSGNYRYNSTE---SALLTHREKEILNKLRIGASNNEIARS 179

Query: 179 LFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNL 213
           LFISE TVK+HLY +FKK+ VKNR +A++W N NL
Sbjct: 180 LFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNL 214