Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 977 a.a., excinuclease ABC subunit UvrA from Rhodanobacter sp000427505 FW510-R12

 Score = 1360 bits (3519), Expect = 0.0
 Identities = 676/941 (71%), Positives = 782/941 (83%), Gaps = 3/941 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD I +RGARTHNLKNI+L +PRD+LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLS+Y
Sbjct: 1   MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLS+MEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H  PL+AQT+SQMVD  L L    + MLLA +++ERKGEHV+  E L AQGF+R R+D
Sbjct: 121 PDHGTPLEAQTVSQMVDATLALDPEQRYMLLAPVIRERKGEHVQVFEQLRAQGFVRTRVD 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           G   DL   P L L  KHTIEV+VDRF+ R D++QRLAESFETAL L  G+V++A M+  
Sbjct: 181 GAVYDLDAVPPLGLRIKHTIEVVVDRFRPREDIKQRLAESFETALRLGDGLVILANMDVP 240

Query: 241 GE-EQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
           G  EQ+ S+ ++CP C YS+ ELEPRLFSFN+P GACP CDGLGV Q FDP RV+    L
Sbjct: 241 GAPEQMLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPACDGLGVTQVFDPARVVGHPEL 300

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           SLA GA+RGWD++N +YFQ++ +LA HY FDV TP+NKL   +Q+ IL+GSG+  I F+Y
Sbjct: 301 SLASGAVRGWDRRNAHYFQLILSLAAHYGFDVDTPWNKLPADVQKAILYGSGKDRIAFRY 360

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           I +RG    ++H FEGIL NLERRY++TES +VREELAKYIS++PC +C+G RL   ARN
Sbjct: 361 ITERGGKVTREHAFEGILPNLERRYKETESAAVREELAKYISDQPCPACEGQRLNRSARN 420

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           VF+ D ALP +   SI DAL FF+ELKL G R +IA K++KEI +RL FL +VGLNYL L
Sbjct: 421 VFVADHALPALTHRSIDDALAFFEELKLTGWRGEIAVKIVKEIRERLTFLNDVGLNYLTL 480

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
            R A++LSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TLT LR+LGNT
Sbjct: 481 DRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNT 540

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIRMADHV+DIGPGAGVHGG VVA+G V++++ +P S+TGQ+LSGV+ I V
Sbjct: 541 VIVVEHDEDAIRMADHVLDIGPGAGVHGGEVVAQGTVQDMLDSPRSVTGQFLSGVRAIEV 600

Query: 600 P-EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH 658
           P E+R P D    + L GA GNNLKNVDL+IP GLFTCVTGVSGSGKSTL+NDT F++A 
Sbjct: 601 PKERRQPIDDDSWLRLNGASGNNLKNVDLAIPAGLFTCVTGVSGSGKSTLVNDTLFRLAA 660

Query: 659 TALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 718
             LNGA T   APY+S+QGL+ FDKV+DIDQSPIGRTPRSNPATYTG+FTP+RE+FA   
Sbjct: 661 AELNGAGTQA-APYQSVQGLQLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLREMFAQVP 719

Query: 719 ESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVR 778
           E+R+RGY PGRFSFNVRGGRCEAC+GDG++KVEMHFLPDVYVPCDVC GKRYNRETLEV 
Sbjct: 720 EARARGYTPGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDVCHGKRYNRETLEVL 779

Query: 779 YKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVK 838
           YKG TI +VLDMTVEDA + F+ VP IARKL TL  VGL YI+LGQSATTLSGGEAQRVK
Sbjct: 780 YKGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTLSGGEAQRVK 839

Query: 839 LARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           L++ELSKRDTG TLYILDEPTTGLHFHDI+QLL VLH+L D GNTVVVIEHNLDVIKTAD
Sbjct: 840 LSKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTAD 899

Query: 899 WIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           W++DLGPEGG GGG I+  GTPE VA    SHT  FL P L
Sbjct: 900 WVVDLGPEGGAGGGRILVAGTPETVAATAESHTGHFLAPHL 940



 Score =  130 bits (328), Expect = 3e-34
 Identities = 73/200 (36%), Positives = 110/200 (55%), Gaps = 15/200 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E   V      +  ++++++ DAL  F+ +                I 
Sbjct: 762 PCDVCHGKRYNRETLEVLYKGHTIADVLDMTVEDALKLFENVPT--------------IA 807

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            +L  L  VGL+Y+ L +SA TLSGGEAQR++L+ ++     G  +Y+LDEP+ GLH  D
Sbjct: 808 RKLDTLRAVGLDYIKLGQSATTLSGGEAQRVKLSKELSKRDTGNTLYILDEPTTGLHFHD 867

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            E+LL  L  L + GNTV+V+EH+ D I+ AD V+D+GP  G  GG ++  G  E + A 
Sbjct: 868 IEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADWVVDLGPEGGAGGGRILVAGTPETVAAT 927

Query: 583 PNSLTGQYLSGVKKIAVPEQ 602
             S TG +L+   + A P++
Sbjct: 928 AESHTGHFLAPHLRPAKPKK 947