Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5

 Score = 1162 bits (3005), Expect = 0.0
 Identities = 588/944 (62%), Positives = 729/944 (77%), Gaps = 11/944 (1%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + VRGAR HNLKN++L IPRD L+V TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 28  LSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 87

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+AR G P  P  
Sbjct: 88  FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTGVPYSPAT 147

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
            +P+++QT+SQMVD+ L LPEG+++ LLA +V+ RKGE+ K L +   +GF R +++G  
Sbjct: 148 GLPIESQTVSQMVDRTLALPEGTRLYLLAPVVRGRKGEYRKELADWMKKGFQRVKVNGAF 207

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPME----- 238
            ++ + P L+   KH I+V+VDR  VR+DL QRLA+SFETAL L+ GI V    +     
Sbjct: 208 HEIAEAPALDKKFKHDIDVVVDRIVVRADLAQRLADSFETALGLADGIAVAEFADEKDEA 267

Query: 239 GDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDAN 298
           G     IFS  FACP  G+++ E+EPRLFSFNNP GACP CDGLGV+Q  DPD V+ D  
Sbjct: 268 GAPRRIIFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGVEQTIDPDLVVPDKA 327

Query: 299 LSLAQGAIRGWDQKNF-YYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEF 357
            SL QGAI  W +    YY Q L ALA+HY F ++ PF  L ++ +E++L GSG  +I F
Sbjct: 328 RSLKQGAIAPWAKSTSPYYGQTLDALAKHYHFKLNVPFADLPEQAREVLLFGSGSEKITF 387

Query: 358 KYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEA 417
            Y +        K  FEG++ NL+RR+++T+S+  REE++KY S  PC  C+G RLK EA
Sbjct: 388 HYDDGMRAYETSK-TFEGVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLKPEA 446

Query: 418 RNVFINDTALPTIVELSIADALTFFQEL--KLEGQRAQIAEKVMKEINDRLQFLVNVGLN 475
             V I    +  I ELS+  A  +F+ L  +L  ++ +IA +++KEI +RL+FL++VGL 
Sbjct: 447 LAVKIAGRHIGEIGELSVRAAAGWFESLPAQLTDKQNEIAGRILKEIRERLRFLLDVGLE 506

Query: 476 YLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRN 535
           YL L+RS+ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDNERLL TL HLR+
Sbjct: 507 YLTLARSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKHLRD 566

Query: 536 LGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVK 595
           LGNTV+VVEHDEDAI  ADHV+D+GPGAG+HGG +VA+G   EI+ANP SLTG+YL+G  
Sbjct: 567 LGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLTGEL 626

Query: 596 KIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFK 655
            + VP +R P + K+ ++L GA GNNLKNV   IP+GLFTC+TGVSG GKSTL+ DT +K
Sbjct: 627 SVGVPARRKP-NPKRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYK 685

Query: 656 IAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
                LNGA+ A PAP+  ++GLEH DKVIDIDQSPIGRTPRSNPATYTG FTPIRE FA
Sbjct: 686 AVARRLNGASEA-PAPFDKLEGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWFA 744

Query: 716 GTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETL 775
           G  E+++RGY  GRFSFNV+GGRCEACQGDGVIK+EMHFLPDVYV CDVCKGKRYNRETL
Sbjct: 745 GLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETL 804

Query: 776 EVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQ 835
           EV +K K+I +VLDMTVE+  +FF  VP +  KL+TL  VGL Y+++GQ ATTLSGGEAQ
Sbjct: 805 EVTFKNKSIADVLDMTVEEGAQFFKAVPSVREKLETLHRVGLDYVKVGQQATTLSGGEAQ 864

Query: 836 RVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIK 895
           RVKL++ELS+R TG+TLYILDEPTTGLHFHD+++LL VLH L + GN+VVVIEHNL+VIK
Sbjct: 865 RVKLSKELSRRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVEQGNSVVVIEHNLEVIK 924

Query: 896 TADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           TADWI+DLGPEGG GGG I+  GTPE VA  + SHT RFL  +L
Sbjct: 925 TADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHTGRFLAEVL 968



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P +  P+   +T+ ++GA  +NLKNVDL IP       TG+SGSGKS+L  DT +     
Sbjct: 16  PVREVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQR 75

Query: 660 ALNGATTATPAPYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIREL 713
               + +A    +  +      D++      I I+Q    + PRS   T T I+  +R L
Sbjct: 76  RYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLL 135

Query: 714 FAGT 717
           +A T
Sbjct: 136 WART 139