Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

 Score = 1439 bits (3726), Expect = 0.0
 Identities = 702/940 (74%), Positives = 823/940 (87%), Gaps = 2/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKI +RGARTHNLKNI+LT+PRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H +PL+AQT+SQMVD VL  PEG+K+MLLA +++ERKGEH+   E L AQGF+RARI+
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARIN 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           G+  +L + PKL+  KKH+I+V+VDRFKVR+DLQQRLAESFETAL+L+ GI +VAPM+ +
Sbjct: 181 GKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 241 -GEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
            GEE IFSA FACP CG+++ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD  R++ + ++
Sbjct: 241 PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGDM 299

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           +LA+GAIRGWD++N YYFQML +LA HY F +  PFN+L    Q++ILHGSG   ++FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGSQNVDFKY 359

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           +NDRGDI  + HPFEGI+ NLERRYR+TES SVREELAK++S +PC  C GTRL+ EAR+
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARH 419

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           V++ +  LP +  L I DA  +F  LKL G+R +IA+K++KEI +RLQFLVNVGL+YL+L
Sbjct: 420 VWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSL 479

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
            RSA+TLSGGEAQRIRLASQIGAGLVGV+Y+LDEPSIGLHQRDN+RLL TL HLR++GNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNT 539

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIR+AD+V+DIGPGAGVHGG +VAEG   E++A+P+SLTG+YLSG  KI V
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEV 599

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P +RTP++ K  + LKGA GNNL+NVDL IP+GL TCVTGVSGSGKSTLIN+T F ++ T
Sbjct: 600 PAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
           ALNGATT   A + SI+GLEH DKV+DIDQSPIGRTPRSNPATYTG+FTPIRELFAG  E
Sbjct: 660 ALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           SRSRGY PGRFSFNV+GGRCEACQGDG+IKVEMHFLPD+YVPCDVCK KRYNRETLE++Y
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           KGK+I E L+MT+E+AR FFD VP +ARKLQTLMDVGLSYI+LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           +RELSKRDTGKTLYILDEPTTGLHF DIQQLL VLHRLRDHGNTVVVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           ++DLGPEGG  GG IIA GTPE V+++  SHT  +LKPLL
Sbjct: 900 LVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLL 939