Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

 Score =  506 bits (1304), Expect = e-147
 Identities = 283/700 (40%), Positives = 403/700 (57%), Gaps = 32/700 (4%)

Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
           FS N P GACP C GLG         ++ D +L++ Q A+  W     +  Q    +   
Sbjct: 144 FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASWPLA--WQGQNQRDILVT 201

Query: 327 YDFDVHTPFNKLSKKIQEIILHGSGRTEIE----FKYINDRGDIRLKKHP-----FEGIL 377
             +DV  P+  L KK ++ IL       +     F     R  ++ K  P     F G  
Sbjct: 202 LGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKRKLEPSYQGTFMGAR 261

Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIAD 437
             +   +  T+S  +++ +++++    C  C+G RL   A +V      +  + +LS+A 
Sbjct: 262 RYILHTFAHTQSALMKKRVSQFMQGSACPLCEGKRLTKAALSVKFAGVDIGELSQLSLAQ 321

Query: 438 ALTFFQE-------LKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGE 490
                +        +KL  ++   A+++ +++ +R+  L  +GL YL+L RS  TLS GE
Sbjct: 322 LAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTLSSGE 381

Query: 491 AQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAI 550
            QR+RLA+Q+G+ L GV+YVLDEPS GLH  D E L   L  L+  GN++ VVEHD + +
Sbjct: 382 LQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDLETM 441

Query: 551 RMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKK 610
           R AD +ID+GP AG HGG V+  G    +     S T  YL   K+++  E+R P     
Sbjct: 442 RRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRAYLFAEKRVSKQERRDPTG--- 498

Query: 611 TVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGA------ 664
            + L+G   NNLK++++  P+G FT VTG+SGSGKS+L++    ++    L         
Sbjct: 499 WLTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEE 558

Query: 665 -TTATPAPYRS----IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
            +    AP  S      GLEH  +++ +DQ PIGRTPRSN ATYTG+F  +R+LFA T  
Sbjct: 559 PSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAATPA 618

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           ++ R Y  G+FSFNV  GRC  C+G+G + VE+ F+P VY PC  C G RYN ETL V++
Sbjct: 619 AKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLAVKW 678

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           +G TI +VL +TVE A E F   P + R LQ L D+GL Y+RLGQ AT LSGGEAQR+KL
Sbjct: 679 QGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQRIKL 738

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           A EL +   G TLY+LDEPTTGLH  D+ +LLS L+ L + G+TVVV+EH + V+  +DW
Sbjct: 739 ATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQSDW 798

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           +ID+GP  G  GG ++A GTP+ VA+ + S TA FL   L
Sbjct: 799 VIDIGPGAGDLGGAVVASGTPQKVAKSKKSRTAAFLAKAL 838



 Score =  134 bits (336), Expect = 3e-35
 Identities = 69/143 (48%), Positives = 99/143 (69%), Gaps = 8/143 (5%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + VRGAR HNL+N+++ IPRD L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
            +  +  PDVD IEGL PA++++Q+  + + RS+VG++T +   +R+LY+R G    P  
Sbjct: 78  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAGS--YPPG 135

Query: 124 QVPLKAQTISQMVDKVLELPEGS 146
           Q  L A+  S        LP+G+
Sbjct: 136 QPMLYAEDFSP------NLPQGA 152



 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSL---AFDTLYAEGQRRYVE----- 55
           + ++G   +NLK++N+  P      +TG+SGSGKSSL   A   L + G  R VE     
Sbjct: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEEP 559

Query: 56  SLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
           SL   A Q         ++HI  L   + ++QK     PRS + T T ++D +R L+A
Sbjct: 560 SLEDDAPQTSGGHIHAGLEHIRRL---VQVDQKPIGRTPRSNLATYTGLFDNVRKLFA 614



 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 26/152 (17%)

Query: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAP 671
           V ++GA  +NL+NVD+ IP       TGVSGSGKS+L   T +  A          + AP
Sbjct: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRY----FESVAP 73

Query: 672 YR----------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESR 721
           Y            +  +E     + + Q     + RS+  + T + + IR L+     SR
Sbjct: 74  YARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLY-----SR 128

Query: 722 SRGYQPGR-------FSFNVRGGRCEACQGDG 746
           +  Y PG+       FS N+  G C  C G G
Sbjct: 129 AGSYPPGQPMLYAEDFSPNLPQGACPQCHGLG 160



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLG 283
           D   ++F+A  A        R  +   FSFN   G CP C+G G
Sbjct: 607 DNVRKLFAATPAA-----KKRHYDAGQFSFNVAKGRCPNCEGEG 645